miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;ABRQ01101197.1/2188-2097 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 127 bits (64), Expect = 3e-29
Identities = 80/83 (96%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 7 gaactggtcggtgatttaggtagtttcctgttgttggggatccacctt--tctctcgaca 64
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 3 gaactggtcggtgatttaggtagtttcctgttgtt-gggatccacctttctctctcgaca 61
Query: 65 gcacgacactgccttcattactt 87
|||||||||||||||||||||||
Sbjct: 62 gcacgacactgccttcattactt 84
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 7 gaactggtcggtgatttaggtagtttcctgttgttggggatccacctttctctcgacagc 66
|||||| || ||| ||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 3 gaactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagc 62
Query: 67 acgacactgccttcattactt 87
|||| |||||||| |||||||
Sbjct: 63 acgaaactgccttaattactt 83
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/85 (85%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 7 gaactggtcggtgatttaggtagtttcctgttgttggggat----ccacctttctctcga 62
||||||||||||||||||||||||||| ||||||||||| | | || | ||||||
Sbjct: 3 gaactggtcggtgatttaggtagtttcatgttgttggggctatggctctctctttctcga 62
Query: 63 cagcacgacactgccttcattactt 87
|||||||| ||||||||||||||||
Sbjct: 63 cagcacgaaactgccttcattactt 87
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 21 tttaggtagtttcctgttgttggggatccacctttctctcgacagcacgacactgccttc 80
|||||||||||| |||||||||| || |||||||||||| ||| || || ||||||||
Sbjct: 17 tttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactgcctta 76
Query: 81 attac 85
|||||
Sbjct: 77 attac 81
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 17 gtgatttaggtagtttcctgttgttggggatcca 50
||||||||||||||||| ||||||||||| ||||
Sbjct: 13 gtgatttaggtagtttcatgttgttggggctcca 46
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 17 gtgatttaggtagtttcctgttgttggggatcca 50
||||||||||||||||| ||||||||||| ||||
Sbjct: 12 gtgatttaggtagtttcatgttgttggggctcca 45
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 gtgatttaggtagtttcctgttgttgggg 45
||||||||||||||||| |||||||||||
Sbjct: 13 gtgatttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttaggtagtttcctgttgttggg 44
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcctgttgttggg 40
>RF00256;mir-196;BX927395.18/57996-57904 7955:Danio rerio
(zebrafish)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 ctggtcggtgatttaggtagtttcctgttgttggg 44
|||||| ||||||||||||||||| |||||||||
Sbjct: 6 ctggtctgtgatttaggtagtttcaagttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 gaactggtcggtgatttaggtagtttcctgttgttggg 44
|||||| || |||| |||||||||||| ||||||||||
Sbjct: 3 gaactgctctgtgaattaggtagtttcatgttgttggg 40
