miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 89.7 bits (45), Expect = 6e-18
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 22 ctggtgcggaaagggcccacagtggacttggt-acactgtatgccctaaccgctcagtcc 80
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 9 ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcagccc 68
Query: 81 ctggg 85
|||||
Sbjct: 69 ctggg 73
>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
bairdii (prairie deer mouse)
Length = 73
Score = 81.8 bits (41), Expect = 2e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 cccagggactggtgcggaaagggcccacagtggac-ttggtacactgtatgccctaaccg 72
|||| ||||||| |||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 1 cccaaggactggcgcggaaagggcccacagtggacgcttgtgcactgtatgccctaaccg 60
Query: 73 ctcagtccctggg 85
||||| |||||||
Sbjct: 61 ctcagcccctggg 73
>RF00897;mir-675;AF190055.1/453-521 50724:Thomomys monticola
(mountain pocket gopher)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 22 ctggtgcggaaagggcccacagtggacttggt-acactgtatgccctaaccgctcagtcc 80
|||| ||||||||| |||||||||||||| | || ||||||||| ||||||||||| ||
Sbjct: 8 ctggcgcggaaagg--ccacagtggacttgttcacgctgtatgcc-taaccgctcagccc 64
Query: 81 ctggg 85
|||||
Sbjct: 65 ctggg 69
