miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 89.7 bits (45), Expect = 4e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 10 ctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccgctcag 66
|||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 9 ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcag 65
>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
lynx)
Length = 72
Score = 65.9 bits (33), Expect = 6e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 7 ggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccgctcag 66
||||||| ||||||||| ||||||| | |||||||||| ||||||||| |||||||||||
Sbjct: 6 ggtctggcgcggagagg-cccacagcgtacttggtgacactgtatgccttcaccgctcag 64
Query: 67 gcccc 71
||||
Sbjct: 65 ccccc 69
>RF00897;mir-675;AF190055.1/453-521 50724:Thomomys monticola
(mountain pocket gopher)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 26 ccacagtggacttggtgacgctgtatgcc 54
|||||||||||||| | ||||||||||||
Sbjct: 22 ccacagtggacttgttcacgctgtatgcc 50
