miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28325_ggo-mir-198:mirbase
          Length = 62

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>28511_hsa-mir-198:mirbase
          Length = 62

 Score =  121 bits (61), Expect = 7e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>30114_ppa-mir-198:mirbase
          Length = 62

 Score =  113 bits (57), Expect = 2e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2  cattggtccagaggggagataggttcctgtgatttttccttcttctctgtagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>30275_ptr-mir-198:mirbase
          Length = 62

 Score =  113 bits (57), Expect = 2e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2  cattggtccagaggggagataggttcctgtgatttttccttcttctctgtagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>30891_ppy-mir-198:mirbase
          Length = 62

 Score =  113 bits (57), Expect = 2e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2  cattggtccagaggggagataggttcctgtgatttttccttcttctctgtagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>27794_mml-mir-198:mirbase
          Length = 62

 Score =  105 bits (53), Expect = 4e-24
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2  cattggtccagaggggaaataggttcctgtgatttttccttcttctctgtagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>28230_mne-mir-198:mirbase
          Length = 62

 Score =  105 bits (53), Expect = 4e-24
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2  cattggtccagaggggaaataggttcctgtgatttttccttcttctctgtagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>27517_age-mir-198:mirbase
          Length = 62

 Score = 83.8 bits (42), Expect = 1e-17
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                    
Query: 11 tggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatga 68
          ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 5  tggtccagaggggagctaggtacctgtgatttttccttcttttctgtagaataaatga 62

>27622_sla-mir-198:mirbase
          Length = 62

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                      
Query: 8  cattggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatg 67
          |||||||||||||||||| | | | ||||||||||||||||||| ||| |||||||||||
Sbjct: 2  cattggtccagaggggagctcgatacctgtgatttttccttcttttctgtagaataaatg 61

           
Query: 68 a 68
          |
Sbjct: 62 a 62

>27581_lla-mir-198:mirbase
          Length = 62

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                    
Query: 11 tggtccagaggggagataggttcctgtgatttttccttcttctctatagaataaatga 68
          ||||||||| ||||| ||||| | ||||||||||||||||| ||| ||||||||||||
Sbjct: 5  tggtccagaagggagctaggtacttgtgatttttccttcttttctgtagaataaatga 62