miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28866_hsa-mir-553:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 17 cttcaattttattttaaaacggtgagattttgtttggtctgagaaaatctcgctgtttta 76
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cttcaattttattttaaaacggtgagattttgttttgtctgagaaaatctcgctgtttta 60
Query: 77 gactgagg 84
||||||||
Sbjct: 61 gactgagg 68
>30495_ptr-mir-553:mirbase
Length = 67
Score = 125 bits (63), Expect = 7e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ttcaattttattttaaaacggtgagattttgtttggtctgagaaaatctcgctgttttag 77
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ttcaattttattttaaaacggtgagattttgttttgtctgagaaaatctcgctgttttag 60
Query: 78 actgagg 84
|||||||
Sbjct: 61 actgagg 67
>31136_ppy-mir-553:mirbase
Length = 68
Score = 111 bits (56), Expect = 1e-25
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 17 cttcaattttattttaaaacggtgagattttgtttggtctgagaaaatctcgctgtttta 76
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1 cttcaattttattttaaaagggtgagattttgttttgtctgagaaaatctctctgtttta 60
Query: 77 gactgagg 84
||||||||
Sbjct: 61 gactgagg 68
>28008_mml-mir-553:mirbase
Length = 68
Score = 95.6 bits (48), Expect = 6e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 17 cttcaattttattttaaaacggtgagattttgtttggtctgagaaaatctcgctgtttta 76
|||||||||||||| |||| |||||| |||||||| ||||||||||||||| ||||||||
Sbjct: 1 cttcaattttatttgaaaaaggtgaggttttgttttgtctgagaaaatctcactgtttta 60
Query: 77 gactgagg 84
||||||||
Sbjct: 61 gactgagg 68
