miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01012;mir-628;AAGU02174016.1/2195-2101 9785:Loxodonta africana
(African savanna elephant)
Length = 95
Score = 153 bits (77), Expect = 5e-37
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 1 agctgttgtgtcacttcctcatgctgacatatttactagagggtaaaattaataaccttc 60
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||
Sbjct: 3 agctgttgtgtcacttcctcatgctgacatgtttactagagggtaaaactgataaccgtc 62
Query: 61 tagtaagagtggcagtcgaagggaagggctcat 93
|||||||||||||||||||||||||||||||||
Sbjct: 63 tagtaagagtggcagtcgaagggaagggctcat 95
>RF01012;mir-628;AABR04029329.1/22049-22145 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 103 bits (52), Expect = 4e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 agctgttgtgtcacttcctcatgctgacatatttactagagggtaaaattaataaccttc 60
|||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct: 3 agctgttgtgtcgcttcctcatgctgacatatttacgagagggtgcaattcataaccttc 62
Query: 61 tagtaagagtggcagt 76
| ||||||||||||||
Sbjct: 63 tggtaagagtggcagt 78
>RF01012;mir-628;ABRQ01185495.1/9537-9443 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 14 cttcctcatgctgacatatttactagagggtaaaattaataaccttctagtaagagtggc 73
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 16 cttcctcatgctgacatatttactagagggtgaaatgaacaaccttctagtaagagtggc 75
Query: 74 agt 76
|||
Sbjct: 76 agt 78
>RF01012;mir-628;AADB02222703.1/291-386 9606:Homo sapiens (human)
Length = 96
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 agctgttgtgtcacttcctcatgctgacatatttactagagggtaaaattaataaccttc 60
|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 3 agctgttggggcacttcctcatgctgacatatttactagagggtgaaattaataaccctt 62
Query: 61 tagtaagagtgg 72
|| |||||||||
Sbjct: 63 tattaagagtgg 74
>RF01012;mir-628;CAAA01051762.1/8325-8233 10090:Mus musculus
(house mouse)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 79/92 (85%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 1 agctgttgtgtcacttcctcatgctgacatatttactagagggtaaaattaataaccttc 60
||||||||||||||||||||| || ||||||||||||||||||| || | |||||||
Sbjct: 3 agctgttgtgtcacttcctcaggcagacatatttactagagggt--gatccacaaccttc 60
Query: 61 tagtaagagtggcagtcgaagggaagggctca 92
|||||||| ||||| ||||||| |||||||
Sbjct: 61 cagtaagagaggcagcagaagggaggggctca 92
>RF01012;mir-628;AALT01367981.1/1010-1104 42254:Sorex araneus
(European shrew)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 29 atatttactagagggtaaaattaataaccttctagtaagagtggcagtcgaagggaagg 87
|||||||||||||| | ||| ||||||| ||||||||||||||||||| | |||||||
Sbjct: 32 atatttactagagg-tggaatgaataaccatctagtaagagtggcagtccaggggaagg 89
>RF01012;mir-628;AANN01484297.1/1287-1379 9365:Erinaceus europaeus
(western European hedgehog)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 60 ctagtaagagtggcagtcgaagggaagggctcat 93
|||||||||||||| ||| |||||||||||||||
Sbjct: 60 ctagtaagagtggcggtcaaagggaagggctcat 93
