miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 184 bits (93), Expect = 2e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaacttgcttccctttgtgaacagaga 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaacttgcttccctttgtgaacagaga 60
Query: 78 tcagatcatgtggcagtttcacctgttgttggt 110
|||||||||||||||||||||||||||||||||
Sbjct: 61 tcagatcatgtggcagtttcacctgttgttggt 93
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaacttgcttccctttgtgaacagaga 77
|||||||||||||||||||||||||||||||||||| | | ||||| ||| |||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaatcttcctccctcgttgaggagaga 60
Query: 78 tcagatcatgtggcagtttcacctgttgttggt 110
||||||||||||||||||||||| |||||||||
Sbjct: 61 tcagatcatgtggcagtttcacccgttgttggt 93
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 73.8 bits (37), Expect = 5e-13
Identities = 81/93 (87%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaacttgcttccctttgtgaacagaga 77
|||||||| |||||||||||||||||||||||| ||||| | | || | ||| | |||
Sbjct: 1 caccactaccagttgaagctgccagcatgatcttaacttccct-ccatggtggggaaaga 59
Query: 78 tcagatcatgtggcagtttcacc-tgttgttgg 109
||||||||||||||||||||||| |||||||||
Sbjct: 60 tcagatcatgtggcagtttcaccttgttgttgg 92
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 80/94 (85%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaacttgcttccctttgtgaacagaga 77
|||| |||||||||||||||||||||||||||| | | | | ||| || ||| | |||
Sbjct: 1 cacctctatcagttgaagctgccagcatgatcttagccttcctcctttgttgaggaaaga 60
Query: 78 t-cagatcatgtggcagtttcacctgttgttggt 110
||||||||||||||||||||||||||||||||
Sbjct: 61 aacagatcatgtggcagtttcacctgttgttggt 94
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 19 accactatcagttgaagctgccagcatgatctaaactt 56
||||||| ||||||||||||||||||||||||||||||
Sbjct: 2 accactagcagttgaagctgccagcatgatctaaactt 39
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 75 agatcagatcatgtggcagtttcacctgttgttggt 110
||||||||||||||||||| |||||||||| ||||
Sbjct: 62 agatcagatcatgtggcagcatcacctgttgatggt 97
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaa 53
|||||||| |||||||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 21 cactatcagttgaagctgccagcatgatctaaactt 56
||||| ||||||||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 27 cagttgaagctgccagcatgatctaaacttgcttc 61
|||||||||||||||||||||||||||||| ||||
Sbjct: 10 cagttgaagctgccagcatgatctaaacttccttc 44
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaactt 56
||||| || ||||||||||||||||||||||||||||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaa 52
|||||||| ||||||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaa 53
|||||||| ||||| |||||||||||||||||||||
Sbjct: 1 caccactagcagttaaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaactt 56
|||||||| ||||||||||||||||||||||| |||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctgaactt 39
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 agatcatgtggcagtttcacctgttgttggt 110
|||||||||||||||||||||||||| ||||
Sbjct: 59 agatcatgtggcagtttcacctgttgatggt 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 agttgaagctgccagcatgatct 50
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctaaacttg 57
|||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttg 40
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaaactt 56
||||| || |||||||||||||||||||||||| |||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctcaactt 39
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 18 caccactatcagttgaagctgccagcatgatctaa 52
||||| || ||||||||||||||||||||||||||
Sbjct: 1 caccaatagcagttgaagctgccagcatgatctaa 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 agatcatgtggcagtttcacctgttg 105
||||||||||||||||||||||||||
Sbjct: 72 agatcatgtggcagtttcacctgttg 97
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 cagttgaagctgccagcatgatct 50
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 agatcagatcatgtggcagtttcacctgttg 105
|||||||||||| ||||||||||||| ||||
Sbjct: 61 agatcagatcatatggcagtttcacccgttg 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 25 atcagttgaagctgccagcatgatct 50
||||| ||||||||||||||||||||
Sbjct: 8 atcagatgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctaa 52
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctaa 52
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctaa 52
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
