miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>44793_miR156:micropc
Length = 88
Score = 174 bits (88), Expect = 9e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtatagtggactatactcttgtttgagt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagtacacgcaggcaattgtatagtggactatactcttgtttgagt 60
Query: 73 tatgcgtgtgctcacttctcttccgtca 100
||||||||||||||||||||||||||||
Sbjct: 61 tatgcgtgtgctcacttctcttccgtca 88
>45385_miR156:micropc
Length = 90
Score = 77.8 bits (39), Expect = 2e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgag 71
||||||||||||||||| ||| || ||||| |||||| | || |||||||||||| ||
Sbjct: 1 tgacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaa 60
Query: 72 ttatgcgtgtgctcacttctctt 94
|||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctctt 83
>45182_miR156:micropc
Length = 90
Score = 77.8 bits (39), Expect = 2e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgag 71
||||||||||||||||| ||| || ||||| |||||| | || |||||||||||| ||
Sbjct: 1 tgacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaa 60
Query: 72 ttatgcgtgtgctcacttctctt 94
|||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctctt 83
>46069_miR156:micropc
Length = 88
Score = 75.8 bits (38), Expect = 6e-15
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 14 gacagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgagt 72
|||||||||||||||| ||| || ||||| |||||| | || |||||||||||| || |
Sbjct: 1 gacagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaat 60
Query: 73 tatgcgtgtgctcacttctctt 94
||||||||||||||||||||||
Sbjct: 61 tatgcgtgtgctcacttctctt 82
>46842_miR156:micropc
Length = 84
Score = 71.9 bits (36), Expect = 9e-14
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 16 cagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgagtta 74
|||||||||||||| ||| || ||||| |||||| | || |||||||||||| || |||
Sbjct: 1 cagaagagagtgagcacaggccggcaactgtatacggagattatactcttgttggaatta 60
Query: 75 tgcgtgtgctcacttctctt 94
||||||||||||||||||||
Sbjct: 61 tgcgtgtgctcacttctctt 80
>46709_miR156:micropc
Length = 90
Score = 69.9 bits (35), Expect = 4e-13
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgag 71
||||||||||||||||| || ||| ||||| ||||| | || |||||||||||| ||
Sbjct: 1 tgacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaa 60
Query: 72 ttatgcgtgtgctcacttctctt 94
|||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctctt 83
>46803_miR156:micropc
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 14 gacagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgagt 72
|||||||||||||||| || ||| ||||| ||||| | || |||||||||||| || |
Sbjct: 1 gacagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaat 60
Query: 73 tatgcgtgtgctcacttctctt 94
||||||||||||||||||||||
Sbjct: 61 tatgcgtgtgctcacttctctt 82
>46146_miR156:micropc
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 16 cagaagagagtgagtacacgcaggcaattgtatagtg-gactatactcttgtttgagtta 74
|||||||||||||| || ||| ||||| ||||| | || |||||||||||| || |||
Sbjct: 1 cagaagagagtgagcactcgccggcaaccgtatatagagattatactcttgttggaatta 60
Query: 75 tgcgtgtgctcacttctctt 94
||||||||||||||||||||
Sbjct: 61 tgcgtgtgctcacttctctt 80
>46151_miR156:micropc
Length = 99
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 14 gacagaagagagtgagtacacgcaggcaattgtatagt 51
|||||||||||||||| | ||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatccgcaggcaattgtatagt 38
>46153_miR156:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtata 49
||||||||||||||||| ||||||| ||||||||||
Sbjct: 1 tgacagaagagagtgagcacacgcacacaattgtata 37
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgcgtgtgctcacttctctt 94
||||||||||||||||||||
Sbjct: 66 tgcgtgtgctcacttctctt 85
>45582_miR156:micropc
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 43 actatacatttgttggaattatgcgtgtgctcacttctctt 83
>45528_miR156:micropc
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 43 actatacatttgttggaattatgcgtgtgctcacttctctt 83
>45524_miR156:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtata 49
||||||||||||||||| ||||||| ||||||||||
Sbjct: 1 tgacagaagagagtgagcacacgcacacaattgtata 37
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgcgtgtgctcacttctctt 94
||||||||||||||||||||
Sbjct: 66 tgcgtgtgctcacttctctt 85
>45113_miR156:micropc
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 43 actatacatttgttggaattatgcgtgtgctcacttctctt 83
>45062_miR156:micropc
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 44 actatacatttgttggaattatgcgtgtgctcacttctctt 84
>45047_miR156:micropc
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 44 actatacatttgttggaattatgcgtgtgctcacttctctt 84
>44842_miR156:micropc
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 44 actatacatttgttggaattatgcgtgtgctcacttctctt 84
>46707_miR156:micropc
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 14 gacagaagagagtgagtacacgcaggcaattgtata 49
|||||||||||||||| ||||||| ||||||||||
Sbjct: 1 gacagaagagagtgagcacacgcacacaattgtata 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgcgtgtgctcacttctctt 94
||||||||||||||||||||
Sbjct: 65 tgcgtgtgctcacttctctt 84
>46175_miR156:micropc
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 70/85 (82%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcaggcaattgtatagtggactatactcttgtttgagt 72
||||||||||||||||| | | ||| |||||||||||| | ||| |||||||| | |
Sbjct: 1 tgacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaat 60
Query: 73 t---atgcgtgtgctcacttctctt 94
| |||||||||||||||||||||
Sbjct: 61 tatgatgcgtgtgctcacttctctt 85
>46798_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tatgcgtgtgctcacttctctt 94
||||||||||||||||||||||
Sbjct: 58 tatgcgtgtgctcacttctctt 79
>46538_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcag 38
||||||||||||||||| ||||||||
Sbjct: 1 tgacagaagagagtgagcacacgcag 26
>46134_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tgacagaagagagtgagtacacgcag 38
||||||||||||||||| ||||||||
Sbjct: 1 tgacagaagagagtgagcacacgcag 26
>46066_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 16 cagaagagagtgagtacacgcaggcaattgtata 49
|||||||||||||| ||||||| ||||||||||
Sbjct: 1 cagaagagagtgagcacacgcacacaattgtata 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgcgtgtgctcacttctctt 94
||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82
>45587_miR156:micropc
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 69/84 (82%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 14 gacagaagagagtgagtacacgcaggcaattgtatagtggactatactcttgtttgagtt 73
|||||||||||||||| | | ||| |||||||||||| | ||| |||||||| | ||
Sbjct: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60
Query: 74 ---atgcgtgtgctcacttctctt 94
|||||||||||||||||||||
Sbjct: 61 atgatgcgtgtgctcacttctctt 84
>45125_miR156:micropc
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tatgcgtgtgctcacttctctt 94
||||||||||||||||||||||
Sbjct: 57 tatgcgtgtgctcacttctctt 78
>46749_miR156:micropc
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gacagaagagagtgagtacacgcag 38
|||||||||||||||| ||||||||
Sbjct: 1 gacagaagagagtgagcacacgcag 25
>45810_miR156:micropc
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||| ||||||||||
Sbjct: 44 actatacatttgttggaattatgcgtgtgcccacttctctt 84
>45659_miR156:micropc
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 54 actatactcttgtttgagttatgcgtgtgctcacttctctt 94
||||||| ||||| || |||||||||||| ||||||||||
Sbjct: 43 actatacatttgttggaattatgcgtgtgcccacttctctt 83
