miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 12 ctgacagaagagagtgagtacacgcaggcaattgtat 48
|||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaattgtat 37
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 12 ctgacagaagagagtgagtacacgcaggcaattgtat 48
|||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaattgtat 37
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 12 ctgacagaagagagtgagtacacgcaggcaattgtata 49
|||||||||||||||||| |||| |||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacagaggcaattgtata 38
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 ctgacagaagagagtgagtacacgcaggcaatt 44
|||||||||||||||||| ||| ||||||||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggcaatt 33
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ctgacagaagagagtgagtacacgcaggca 41
|||||||||||||||||| ||| |||||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggca 30
