miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 230 bits (116), Expect = 4e-60
Identities = 125/128 (97%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaattatcggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaattatcggt 69
Query: 62 atggttcaaaaaccaattttcttgcaagatatgcagttgctgcctctagcttgtcaccac 121
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 68 atggttcgaaaaccaattttcttgcaagatatgcagttgctgcctctagctcgtcaccgc 9
Query: 122 cccttgca 129
||||||||
Sbjct: 8 cccttgca 1
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 161 bits (81), Expect = 3e-39
Identities = 105/113 (92%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaattatcggt 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 128 ggcaaagggaggcagcaagcttgagacaacaactgcacagcttgcaagaaaatcatcggt 69
Query: 62 atggttcaaaaaccaattttcttgcaagatatgcagttgctgcctctagcttg 114
|||| |||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 68 atggccataaaaccgattttcttgcaagatatgcagttgctgtctctagcttg 16
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 9 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaat 54
|||||| ||||||| |||||| |||||||| | |||||||||||||
Sbjct: 8 ggaggcggcaagctagagacagcaactgcatatcttgcaagaaaat 53
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 135 bits (68), Expect = 2e-31
Identities = 104/115 (90%), Gaps = 2/115 (1%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaattatcggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 130 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatcatcggt 71
Query: 62 atggttcaaaaaccaa--ttttcttgcaagatatgcagttgctgcctctagcttg 114
| | |||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct: 70 acgtcaacaaaaccgattttttcttgcaaggtatgcagttgctgcctctagcttg 16
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 12 ggcagcaagcttgagacaacaactgcacaacttgcaagaaaa 53
||||||||||| ||| || |||||||| | ||||||||||||
Sbjct: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaaa 52
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 52
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 167 ggcaaagggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 117
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 79.8 bits (40), Expect = 8e-15
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 9 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 52
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 158 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 115
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 52
||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 173 ggcaaagggaggcagcaagcttgaggcagcaactgcacgacttgcaagaaa 123
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 12 ggcagcaagcttgagacaacaactgcacaacttgcaagaaa 52
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 229 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 189
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 9 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaattatcggtatg 64
|||||||||||||||||| || |||||||| |||||||||||| || |||||||||
Sbjct: 122 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaatatcatcggtatg 67
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 80 ttcttgcaagatatgcagttgctgcctctagcttg 114
|||||||||| ||||||||||||||||| ||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttg 114
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgc 46
||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 134 ggcaaagggaggcagcaagcttgaggcagcaactgcataacttgc 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 gcaagatatgcagttgctgcctctagcttg 114
||||| ||||||||||||||||| ||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttg 119
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 2 ggcaaagggaggcagcaagcttgagacaacaactgcacaacttgcaaga 50
||||||||||||||| ||||||||| || |||||||| |||||||||||
Sbjct: 129 ggcaaagggaggcaggaagcttgaggcagcaactgcataacttgcaaga 81
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 81 tcttgcaagatatgcagttgctgcctctagctt 113
||||||||| ||||||||||||||||| |||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagctt 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ggcagcaagcttgagacaacaactgca 38
||||||||||| |||||||||||||||
Sbjct: 11 ggcagcaagctcgagacaacaactgca 37
