miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54436_sbi-miR168:pmrd
Length = 106
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 70
Query: 61 cgccttgcaccaagtgaatccgagcc 86
||||||||||||||||||||||||||
Sbjct: 71 cgccttgcaccaagtgaatccgagcc 96
>54999_zma-miR168a:pmrd
Length = 104
Score = 101 bits (51), Expect = 8e-23
Identities = 78/86 (90%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 60
|||||||||||||||||||||||||||||||| |||||| | | |||||||| |||||
Sbjct: 11 cgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcc 68
Query: 61 cgccttgcaccaagtgaatccgagcc 86
|||||||||||||||||||| |||||
Sbjct: 69 cgccttgcaccaagtgaatcggagcc 94
>54636_sof-miR168a:pmrd
Length = 104
Score = 101 bits (51), Expect = 8e-23
Identities = 78/86 (90%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 60
|||||||||||||||||||||||||||||||| |||||| | | |||||||| |||||
Sbjct: 11 cgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcc 68
Query: 61 cgccttgcaccaagtgaatccgagcc 86
|||||||||||||||||||| |||||
Sbjct: 69 cgccttgcaccaagtgaatcggagcc 94
>55000_zma-miR168b:pmrd
Length = 104
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 4 ctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgc 63
||||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||
Sbjct: 14 ctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcccgc 71
Query: 64 cttgcaccaagtgaatccgagcc 86
|||||| |||||||||| |||||
Sbjct: 72 cttgcatcaagtgaatcggagcc 94
>48873_osa-miR168a:pmrd
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 59
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 60 ccgccttgcaccaagtgaatccgagcc 86
||||||||||||||||||||| |||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagcc 86
>48872_osa-miR168a:pmrd
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 59
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 60 ccgccttgcaccaagtgaatccgagcc 86
||||||||||||||||||||| |||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagcc 86
>48871_osa-miR168a:pmrd
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 59
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 60 ccgccttgcaccaagtgaatccgagcc 86
||||||||||||||||||||| |||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagcc 86
>54637_sof-miR168b:pmrd
Length = 103
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 7 gggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgcctt 66
|||||||||||| ||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 17 gggctcgcttgg-gcagatcgggacccgccgcccggcc--gacgggacggatcccgcctt 73
Query: 67 gcaccaagtgaatccgagcc 86
|||||||||||||| |||||
Sbjct: 74 gcaccaagtgaatcggagcc 93
>55002_zma-miR168m:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 7e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 70
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 71 caagtga 77
|||||||
Sbjct: 59 caagtga 65
>54655_ssp-miR168:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 7e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 70
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 71 caagtga 77
|||||||
Sbjct: 59 caagtga 65
>48661_hvv-miR168:pmrd
Length = 66
Score = 61.9 bits (31), Expect = 7e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 70
|||||||||||||||||||||| ||||| || | |||||| | |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgccc-gccccgacgggccggatcccgccttgcac 59
Query: 71 caagtga 77
|||||||
Sbjct: 60 caagtga 66
>48875_osa-miR168m:pmrd
Length = 67
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacctgccgccg 40
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccg 30
>55001_zma-miR168c:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccg-ccttgca 69
||||||| |||||||||||||| |||||| || | |||||||| ||||||| |||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgc-gacgggacggatcccgcccttgca 59
Query: 70 ccaagtga 77
|||||||
Sbjct: 60 tcaagtga 67
>48349_bna-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 gatcccgccttgcaccaagtgaatccgag 84
|||||||||||| | ||||||||||||||
Sbjct: 95 gatcccgccttgtatcaagtgaatccgag 123
>54665_stu-miR168:pmrd
Length = 133
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacct 33
||||||||||||| |||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
>54546_sly-miR168:pmrd
Length = 145
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcagatcgggacct 33
||||||||||||| |||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
