miRNEST 2.0, an integrative microRNA resource :: BLAST
>54628_sof-miR159a:pmrd
Length = 265
Score = 305 bits (154), Expect = 9e-84
Identities = 238/263 (90%), Gaps = 6/263 (2%)
Strand = Plus / Plus
Query: 1 ctgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggt 60
|||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtac 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tctagag-ggccggagaagagat----tcatgtggtcgtcagtctttgagataggcttgt 175
| | ||| || ||||| ||| | || |||| ||| |||||||||||||||||||
Sbjct: 122 tttcgagagggaggagaggagctagactctcatggtggtc-gtctttgagataggcttgt 180
Query: 176 gatttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 240
Query: 236 gctctgcatcctgatccatccat 258
|||||||||||||||||||||||
Sbjct: 241 gctctgcatcctgatccatccat 263
>54629_sof-miR159b:pmrd
Length = 266
Score = 291 bits (147), Expect = 1e-79
Identities = 238/264 (90%), Gaps = 7/264 (2%)
Strand = Plus / Plus
Query: 1 ctgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggt 60
|||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtac 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 62 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tct---agagggccg-gagaag--agattcatgtggtcgtcagtctttgagataggcttg 174
| | |||||| | ||| || ||| || ||| ||| ||||||||||||||||||
Sbjct: 122 tttcggagagggaggagaggagctagactctcacggtggtc-gtctttgagataggcttg 180
Query: 175 tgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 234
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 240
Query: 235 agctctgcatcctgatccatccat 258
||||||||||||||| ||||||||
Sbjct: 241 agctctgcatcctgaaccatccat 264
>54631_sof-miR159d:pmrd
Length = 265
Score = 276 bits (139), Expect = 8e-75
Identities = 236/265 (89%), Gaps = 10/265 (3%)
Strand = Plus / Plus
Query: 1 ctgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggt 60
|||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 2 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 61
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtac 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 62 tgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 121
Query: 121 tctagag-ggccggagaagagat------tcatgtggtcgtcagtctttgagataggctt 173
| | ||| || ||||| ||| | ||||| || ||| |||| ||||||| ||||
Sbjct: 122 tttcgagagggaggagaggagctagactctcatgggg--gtc-gtctatgagatacgctt 178
Query: 174 gtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagg 233
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaagg 238
Query: 234 gagctctgcatcctgatccatccat 258
|||||||||||||||||||||||||
Sbjct: 239 gagctctgcatcctgatccatccat 263
>54632_sof-miR159e:pmrd
Length = 264
Score = 260 bits (131), Expect = 5e-70
Identities = 235/264 (89%), Gaps = 8/264 (3%)
Strand = Plus / Plus
Query: 1 ctgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggt 60
|||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
Query: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtac 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
Query: 121 tctagag-ggccggagaag----agattcatgtggtcgtcagtctttgagataggcttgt 175
| | ||| || ||||| | ||| || ||| ||| |||||||||||||||||||
Sbjct: 121 tttcgagagggaggagaggagctagactctcacggtggtc-gtctttgagataggcttgt 179
Query: 176 gatttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 235
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 180 ggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagga 239
Query: 236 gctc-tgcatcctgatccatccat 258
|||| ||||| |||||||||||||
Sbjct: 240 gctcttgcat-ctgatccatccat 262
>54930_zma-miR159a:pmrd
Length = 246
Score = 176 bits (89), Expect = 6e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 157 gtctttgagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggcc 216
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 202
Query: 217 gctctttggattgaagggagctctgcatcctgatcca 253
|||||||||||||||||||||||||||||||||||||
Sbjct: 203 gctctttggattgaagggagctctgcatcctgatcca 239
Score = 119 bits (60), Expect = 1e-27
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 16 gaagcggagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 74
||||||||||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 76
Query: 75 ttcatggttcccactatcctatctcatcatgt 106
||||||||||||||||||||||||||||||||
Sbjct: 77 ttcatggttcccactatcctatctcatcatgt 108
>51338_pgl-miR159:pmrd
Length = 226
Score = 145 bits (73), Expect = 2e-35
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 161 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctc 220
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 221 tttggattgaagggagctctg 241
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 85.7 bits (43), Expect = 2e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 20 cggagctcctatcattccaatgaagggcccttttcatgggt-ggttccgctgctcgttca 78
|||||||||||||||||||||||| || |||| ||||| ||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 79 tggttcccactatcctatctcat 101
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 109 bits (55), Expect = 1e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 163 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 222
||||||||| |||| ||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 223 tggattgaagggagctctg 241
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 57 gggtggttccgctgctcgttcatggttcccactatccta 95
||||||| | |||||||||||||||||||||||||||||
Sbjct: 40 gggtggtacagctgctcgttcatggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 99.6 bits (50), Expect = 1e-21
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 161 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 219
||||||| |||||||| |||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 220 ctttggattgaagggagctctgcatc 245
|||||||||||||||||||||||||
Sbjct: 181 gtttggattgaagggagctctgcatc 206
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 55 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 56 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>48820_osa-miR159b:pmrd
Length = 188
Score = 89.7 bits (45), Expect = 1e-18
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 163 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 222
|||||||||||||| ||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 223 tggattgaagggagctctgcatcctgatc 251
||||||||||||||||||||||| |||||
Sbjct: 160 tggattgaagggagctctgcatcttgatc 188
Score = 54.0 bits (27), Expect = 6e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 67 gctgctcgttcatggttcccactatcctatctcat 101
|||||| |||||||||||||||||| |||||||||
Sbjct: 58 gctgcttgttcatggttcccactattctatctcat 92
>54934_zma-miR159e:pmrd
Length = 203
Score = 85.7 bits (43), Expect = 2e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 161 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 219
||||||| |||||||| ||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 220 ctttggattgaagggagctctgc 242
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 55 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 38 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 86
>54653_spr-miR159:pmrd
Length = 392
Score = 77.8 bits (39), Expect = 4e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctctgcatcctgatccatccatt 259
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccatccatt 39
>48657_hvv-miR159b:pmrd
Length = 174
Score = 77.8 bits (39), Expect = 4e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 163 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 222
|||||||||||||| ||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 223 tggattgaagggagctctg 241
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 67 gctgctcgttcatggttcccactatcctatctc 99
|||||| ||||||||||||||||||||||||||
Sbjct: 49 gctgcttgttcatggttcccactatcctatctc 81
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaaggg 46
||||||||||||||||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaggg 27
>54673_tae-miR159a:pmrd
Length = 177
Score = 75.8 bits (38), Expect = 2e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 163 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 222
|||| |||| |||| |||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 223 tggattgaagggagctctgcat 244
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 67 gctgctcgttcatggttcccactatcctatctc 99
|||||||||||||||||||||||||||||||||
Sbjct: 50 gctgctcgttcatggttcccactatcctatctc 82
>54937_zma-miR159m:pmrd
Length = 457
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctctgcatcctgatcca 253
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 218 ctctttggattgaagggagctctgcatc 245
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 218 ctctttggattgaagggagctctgcatc 245
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 218 ctctttggattgaagggagctctgcatc 245
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 6e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctctgcatcctgatc 251
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 218 ctctttggattgaagggagctctg 241
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctctgcatc 245
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctct 240
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctctgcatc 245
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 222 ttggattgaagggagctctgcatc 245
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 221 tttggattgaagggagctct 240
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
