miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 85.7 bits (43), Expect = 2e-16
Identities = 91/106 (85%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 44 taagttgttttggcatttctacatacatagcttttattatgtatctagacatatagtata 103
||||| |||||||| |||||| |||||||||| |||||||||||||||| |||||
Sbjct: 1 taagtcgttttggcttttctaggtacatagcttgc--tatgtatctagacatagcgtata 58
Query: 104 cctaggtgcatagcaaaagctatatacctagaaaagtcaaaatgac 149
|||||||| ||||||||||||| ||||||| |||| |||||||||
Sbjct: 59 tctaggtgcttagcaaaagctatgtacctaggaaagccaaaatgac 104
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 81.8 bits (41), Expect = 3e-15
Identities = 113/137 (82%), Gaps = 5/137 (3%)
Strand = Plus / Plus
Query: 26 tccctccgttccaatttataagttgttttggcatttctacatacatagcttttattatgt 85
||||||| |||||| ||||||| |||||||| |||||| |||||| ||||| | |||||
Sbjct: 8 tccctccattccaaattataagacgttttggcttttctagatacatggctttaactatgt 67
Query: 86 atctagacatatagtatacctaggtgcatagcaaaagctatatacctagaaaagtcaaaa 145
||||||| ||||| ||| |||| ||||||||||||| || |||| |||| |||||
Sbjct: 68 atctaga-----tgtatatctaagtgcgtagcaaaagctatgtatctagtaaagccaaaa 122
Query: 146 tgacctataatttggga 162
|| | ||||||||||||
Sbjct: 123 tgtcttataatttggga 139
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 73.8 bits (37), Expect = 8e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 22 ttactccctccgttccaatttataagttgttttggcatttctacatacatagctttt 78
|||||||||||||||||| || |||| |||||||||||||||| |||||||| ||||
Sbjct: 4 ttactccctccgttccaaattgtaaggtgttttggcatttctagatacatagatttt 60
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatta 82
||||||||||||||||| ||||||| |||||| |||||| || ||| | ||||| ||
Sbjct: 144 tactccctccgttccaaattataagacattttggtttttctagatgcattgattttacta 85
Query: 83 tgtatctagacata 96
||||| ||||||||
Sbjct: 84 tgtatttagacata 71
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 71.9 bits (36), Expect = 3e-12
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatta 82
|||||||||||| |||| |||||| ||||||||||||||| || ||||||||| | ||
Sbjct: 152 tactccctccgtcccaaactataagacgttttggcatttctagattcatagctttgacta 93
Query: 83 tgtatctagacatatagtatacctaggtgcatagcaaaag 122
|| ||||||||||| |||| |||| |||||| ||||||
Sbjct: 92 tgaatctagacataacatatatctagatgcataccaaaag 53
Score = 50.1 bits (25), Expect = 1e-05
Identities = 63/75 (84%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatta 82
||||||||||||||||| |||||| |||||||| |||||| || |||| ||||| ||
Sbjct: 5 tactccctccgttccaaattataa---gttttggcttttctatattcataacttttggta 61
Query: 83 tgtatctagacatat 97
|| ||||||| ||||
Sbjct: 62 tgcatctagatatat 76
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 71.9 bits (36), Expect = 3e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 105 ctaggtgcatagcaaaagctatatacctagaaaagtcaaaatgacctataatttgg 160
|||||||||||||||||||||| |||||||| ||| ||||||||| || |||||||
Sbjct: 44 ctaggtgcatagcaaaagctatgtacctagagaagccaaaatgacttacaatttgg 99
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggcatttcta 64
|||||||||| |||||| || |||||||||||||| ||||||
Sbjct: 5 tactccctccattccaaattgtaagttgttttggcttttcta 46
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 71.9 bits (36), Expect = 3e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatta 82
||||||||||| ||||| ||||||| ||||| | |||||| |||||| ||||||| ||
Sbjct: 5 tactccctccgctccaaattataagacattttgacttttctagatacattgcttttacta 64
Query: 83 tgtatctagacatatagtatacctaggtgcatagcaaaagctat 126
|| || |||||||| ||||| ||| ||||||||||||| ||||
Sbjct: 65 tgcatttagacatagtgtatatctaagtgcatagcaaaaactat 108
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 110 tgcatagcaaaagctatatacctagaaaagtcaaaatgacctataatttgg 160
||||||| |||||| || || ||||||||||||||||| | ||||||||||
Sbjct: 68 tgcatagtaaaagcaatgtatctagaaaagtcaaaatgtcttataatttgg 18
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 67.9 bits (34), Expect = 5e-11
Identities = 86/102 (84%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 26 tccctccgttccaatttataagttgttttggcatttctacatacatagcttttattatgt 85
|||||||||||||| | |||| |||||||| ||| || |||||||||||||| | |||
Sbjct: 145 tccctccgttccaaaatgcaagtcgttttggcttttttagatacatagcttttactctgt 86
Query: 86 atcta-gacatatagtatacctaggtgcatagcaaaagctat 126
| ||| |||||| ||||| |||||||||||||||||||||
Sbjct: 85 acctaagacatagcatatacataggtgcatagcaaaagctat 44
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggc 57
||||||||||||||||| || ||||| ||||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgttttggc 39
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 67.9 bits (34), Expect = 5e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatta 82
||||||||||||||||| || |||| ||||||||| |||||| |||||| ||||||| ||
Sbjct: 5 tactccctccgttccaaattgtaagatgttttggcttttctagatacattgcttttacta 64
Query: 83 tg 84
||
Sbjct: 65 tg 66
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 63.9 bits (32), Expect = 8e-10
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatta 82
||||||||||||||||| |||||| |||||||| |||||| |||||| ||||| ||
Sbjct: 153 tactccctccgttccaaactataagacgttttggc-tttctagatacattttttttacta 95
Query: 83 tgtatctagacatatagtatacctaggtgcatagcaaaag 122
|||||||||||| | | ||| ||| ||||||||||||||
Sbjct: 94 tgtatctagacacagtgcatatctaagtgcatagcaaaag 55
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 54 tggcatttctacatacatagcttttattatgtatctagacat 95
|||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 110 tggcttttctagatacatagcttttactatgtatctagacat 69
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 58.0 bits (29), Expect = 5e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 22 ttactccctccgttccaatttataagttgttttggcatttctacatacatagctttt 78
|||||||||||||||||| ||||||| |||||||| |||||| || ||||||||||
Sbjct: 112 ttactccctccgttccaaattataagacgttttggc-tttctagattcatagctttt 57
>RF00906;MIR1122;ABXC01000872.1/103457-103600 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 56.0 bits (28), Expect = 2e-07
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 21 tttactccctccgttccaatttataagttgttttggcatttctacatacatagcttttat 80
|||||||||||| |||||| |||||| ||||||| |||||| |||||| |||||||
Sbjct: 142 tttactccctccattccaaactataagacattttggcttttctaaatacattgcttttac 83
Query: 81 tatgtatctaga 92
|||||||||||
Sbjct: 82 aatgtatctaga 71
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 54.0 bits (27), Expect = 7e-07
Identities = 113/141 (80%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggcatttctacatacatagcttt---ta 79
|||||||||||||||| ||||||| |||||||| |||||| |||||| ||| ||
Sbjct: 5 tactccctccgttccacattataagacgttttggcttttctagatacattatttttacta 64
Query: 80 ttatgtatctagacatatagtatacctaggtgcatagcaaaagctatatacctagaaaag 139
|||| ||||||||||| || || ||| ||||||||||||||| || | ||||||||
Sbjct: 65 ctatgcatctagacatagcgtgtatctaagtgcatagcaaaagccatgaatctagaaaac 124
Query: 140 tcaaaatgacctataatttgg 160
||||| | | ||||||||||
Sbjct: 125 ccaaaacgtcttataatttgg 145
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttggcatttcta 64
||||||||||||||||| |||||||| ||| |||| ||||||
Sbjct: 5 tactccctccgttccaaattataagtcgttctggcttttcta 46
>RF00906;MIR1122;ABXC01000115.1/34151-34263 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 81 tatgtatctagacatatagtatacctaggtgcatagcaaaa 121
||||||||||||||||| |||| |||||| ||||||||||
Sbjct: 74 tatgtatctagacatatgttatatctaggtacatagcaaaa 34
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttg 55
||||||||| ||||||| |||||||||||||||
Sbjct: 5 tactccctctgttccaaattataagttgttttg 37
Score = 50.1 bits (25), Expect = 1e-05
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 81 tatgtatctagacatatagtatacctaggtgcatagcaaaagctatatacctagaaaagt 140
||||||||||||||||| | || |||| |||||||||||| || |||| | ||||||
Sbjct: 62 tatgtatctagacatattatttatctagatgcatagcaaaatgaatgtaccaaaaaaagt 121
Query: 141 caaaatgacctataatttgggacagaggg 169
||| |||| |||||||||| || |||||
Sbjct: 122 taaagtgacttataatttggaacggaggg 150
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagt 48
||||||||||||||||| ||||||||
Sbjct: 154 tactccctccgttccaaattataagt 129
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagttgttttg 55
||||||||||||||||| |||||||| ||||||
Sbjct: 5 tactccctccgttccaaattataagtcgttttg 37
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 81 tatgtatctagacatatagtatacctaggtgcatagcaaaa 121
||||||||||||||||| | || |||||||||||||||||
Sbjct: 62 tatgtatctagacatattatttatctaggtgcatagcaaaa 102
>RF00906;MIR1122;ABXC01002870.1/113864-113706 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 48.1 bits (24), Expect = 5e-05
Identities = 117/148 (79%)
Strand = Plus / Minus
Query: 22 ttactccctccgttccaatttataagttgttttggcatttctacatacatagcttttatt 81
|||||||||||||| ||| |||||| ||||| || |||||| |||||| ||||| |
Sbjct: 156 ttactccctccgtttcaaactataagacgttttagcttttctagatacatcgctttcaca 97
Query: 82 atgtatctagacatatagtatacctaggtgcatagcaaaagctatatacctagaaaagtc 141
| | ||||||||||| ||||| ||| ||||||| ||||| || | ||||||||| |
Sbjct: 96 acgcatctagacatagtgtatatctaagtgcataaagaaagccatgaatctagaaaagcc 37
Query: 142 aaaatgacctataatttgggacagaggg 169
|||| | | ||||||||| ||||||||
Sbjct: 36 aaaacgtcttataatttgaaacagaggg 9
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagttgttttggc 57
||||||||||||||||| ||||||| ||||||||
Sbjct: 105 tactccctccgttccaaattataagacgttttggc 71
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagt 48
||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagt 48
||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagt 48
||||||||||||||||| ||||||||
Sbjct: 154 tactccctccgttccaaattataagt 129
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 tactccctccgttccaatttataagt 48
||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 tactccctccgttccaatttataagt 48
||||||||||||||||| ||||||||
Sbjct: 154 tactccctccgttccaaattataagt 129
>RF00906;MIR1122;ABXC01001279.1/17843-17947 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 22 ttactccctccgttccaatttataagttgttttg 55
||||||||||| |||||| |||||||||| ||||
Sbjct: 102 ttactccctccattccaaattataagttgctttg 69
