miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35302_aga-mir-277:mirbase
Length = 90
Score = 178 bits (90), Expect = 5e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 11 gttttggggtacgtgtcagaggtgcatttacatcgaactattccagttgaggtatttgta 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttttggggtacgtgtcagaggtgcatttacatcgaactattccagttgaggtatttgta 60
Query: 71 aatgcactatctggtacgacattccagaat 100
||||||||||||||||||||||||||||||
Sbjct: 61 aatgcactatctggtacgacattccagaat 90
>36035_cqu-mir-277:mirbase
Length = 96
Score = 85.7 bits (43), Expect = 6e-18
Identities = 82/94 (87%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 10 agttttggggtacgtgtcagaggtgcatttacatcgaactattccagttgag--gtattt 67
|||||||| || ||||||||| |||||||||||| | | |||| ||| || ||||||
Sbjct: 2 agttttggagtgcgtgtcagaagtgcatttacataggtattttcccgtttagcagtattt 61
Query: 68 gtaaatgcactatctggtacgacattccagaatc 101
||||||||||||||||||||||||||||||||||
Sbjct: 62 gtaaatgcactatctggtacgacattccagaatc 95
>35207_aae-mir-277:mirbase
Length = 95
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 62 gtatttgtaaatgcactatctggtacgacattccagaatc 101
||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gtatttgtaaatgcactatctggtacgacattccagaatc 94
>36119_dan-mir-277:mirbase
Length = 98
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89
>36286_dgr-mir-277:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 53 ttgtaaatgcactatctggtacgacattccagaa 86
>36794_dmo-mir-277:mirbase
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 52 ttgtaaatgcactatctggtacgacattccagaa 85
>36871_dpe-mir-277:mirbase
Length = 98
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89
>36951_dps-mir-277:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89
>37371_dvi-mir-277:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 53 ttgtaaatgcactatctggtacgacattccagaa 86
>37450_dwi-mir-277:mirbase
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
||||||||||||||||||||||||||||||||||
Sbjct: 57 ttgtaaatgcactatctggtacgacattccagaa 90
>36197_der-mir-277:mirbase
Length = 98
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
|||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89
>36417_dme-mir-277:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
|||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89
>36418_dme-mir-277:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
|||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89
>37157_dse-mir-277:mirbase
Length = 98
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
|||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89
>37526_dya-mir-277:mirbase
Length = 98
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
|||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89
>35381_ame-mir-277:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacat 92
||||||||||||||||||||||||||
Sbjct: 49 tgtaaatgcactatctggtacgacat 74
>35550_bmo-mir-277:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacat 92
||||||||||||||||||||||||||
Sbjct: 79 tgtaaatgcactatctggtacgacat 104
>37588_ngi-mir-277:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacat 92
||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77
>37619_nlo-mir-277:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacat 92
||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77
>37661_nvi-mir-277:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacat 92
||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77
>35077_api-mir-277:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgaca 91
|||||||||||||||||||||||||
Sbjct: 55 tgtaaatgcactatctggtacgaca 79
>37235_dsi-mir-277:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
|||||||||| ||| ||||||||||||||||||
Sbjct: 57 tgtaaatgcattatttggtacgacattccagaa 89
>37769_tca-mir-277:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgaca 91
|||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75
>37770_tca-mir-277:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 tgtaaatgcactatctggtacgaca 91
|||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75
