miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 77 gtgttctcaggtcgcccctgctgaattttc 106
||||||||||||||||||||||||||||||
Sbjct: 68 gtgttctcaggtcgcccctgctgaattttc 97
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 gtgttctcaggtcgcccctgctg 99
|||||||||||||||||||||||
Sbjct: 99 gtgttctcaggtcgcccctgctg 121
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 70 ttttcacgtgttctcaggtcgcccctgctga 100
|||||| ||||||||||||| ||||||||||
Sbjct: 81 ttttcatgtgttctcaggtcacccctgctga 111
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 70 ttttcacgtgttctcaggtcgcccctgctga 100
|||||| ||||||||||||| ||||||||||
Sbjct: 80 ttttcatgtgttctcaggtcacccctgctga 110
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tttcacgtgttctcaggtcgcccctgc 97
||||| |||||||||||||||||||||
Sbjct: 103 tttcatgtgttctcaggtcgcccctgc 129
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 gtgttctcaggtcgcccctgctg 99
|||||||||||||||||||||||
Sbjct: 61 gtgttctcaggtcgcccctgctg 83
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 71 tttcacgtgttctcaggtcgcccctgctga 100
||||| ||||||||||||| ||||||||||
Sbjct: 80 tttcatgtgttctcaggtcacccctgctga 109
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 ttcacgtgttctcaggtcgcccctgc 97
|||| |||||||||||||||||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgc 77
