miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 182 bits (92), Expect = 7e-46
Identities = 98/100 (98%)
Strand = Plus / Plus
Query: 11 ctcaacccccacctcgcctgcccagtgttcagactacctgttcatcaggccgcagctgag 70
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctcaacccccacctcgcctgcccagtgttcagactacctgttcatcaggctgcagctgaa 60
Query: 71 cagtagtctgcacattggttaggctaggctgggaaatgac 110
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttaggctaggctgggaaatgac 100
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio (zebrafish)
Length = 99
Score = 125 bits (63), Expect = 1e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 22 cctcgcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagtagtctgc 81
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||
Sbjct: 11 cctcgcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgc 70
Query: 82 acattggttaggctaggctggga 104
|||||||||||||| ||||||||
Sbjct: 71 acattggttaggctgggctggga 93
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus aculeatus
(three-spined stickleback)
Length = 100
Score = 117 bits (59), Expect = 3e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 26 gcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagtagtctgcacat 85
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacat 75
Query: 86 tggttaggctaggctggga 104
|||||||||| ||||||||
Sbjct: 76 tggttaggctgggctggga 94
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 16 cccccacctcgcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagta 75
|||||||| ||||||||||||||||||||||||||||| || || || |||| |||||
Sbjct: 6 cccccaccccgcctgcccagtgttcagactacctgttcctccagctacaactgaacagta 65
Query: 76 gtctgcacattggttaggctaggctggga 104
|||||||||||||||||||||| ||||||
Sbjct: 66 gtctgcacattggttaggctagactggga 94
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 93.7 bits (47), Expect = 5e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 26 gcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagtagtctgcacat 85
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 75
Query: 86 tggttaggctaggctggga 104
|||||| ||| || |||||
Sbjct: 76 tggttaagctgggttggga 94
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 16 cccccacctcgcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagta 75
|||||| | |||||||||||||||||||||||||||||| | | | | || |||||
Sbjct: 6 cccccatcccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagta 65
Query: 76 gtctgcacattggttaggct 95
||||||||||||||||||||
Sbjct: 66 gtctgcacattggttaggct 85
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagtagtctgcaca 84
|||||||||||||||||||||||||||||| | | | | || ||||||||||||||
Sbjct: 15 cgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcaca 74
Query: 85 ttggttaggct 95
|||||||||||
Sbjct: 75 ttggttaggct 85
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttcatcaggccgcagctgagcagtagtctgcaca 84
|||||||||||||||||||||||||||||| | | | | || ||||||||||||||
Sbjct: 14 cgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcaca 73
Query: 85 ttggttaggct 95
|||||||||||
Sbjct: 74 ttggttaggct 84
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttca 54
||||||||||||||||||||||||||||||
Sbjct: 14 cgcctgcccagtgttcagactacctgttca 43
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggct 95
|||||||||||||||||||||||||
Sbjct: 60 cagtagtctgcacattggttaggct 84
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 58.0 bits (29), Expect = 3e-08
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 22 cctcgcctgcccagtgttcagactacctgttcatcaggc-cgcagc-tgagcagtagtct 79
||||||| |||||||||||||||||||||||| |||| | || | || |||||||||
Sbjct: 12 cctcgccaacccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtct 71
Query: 80 gcacattggttaggctaggct 100
|||||||||||||||| ||||
Sbjct: 72 gcacattggttaggctgggct 92
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggctggg 103
||||||||||||||||||||||||| |||||||
Sbjct: 60 cagtagtctgcacattggttaggctgggctggg 92
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggctggg 103
||||||||||||||||||||||||| |||||||
Sbjct: 60 cagtagtctgcacattggttaggctgggctggg 92
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggctgggaaa 106
||||||||||||||||||||||||| |||| |||||
Sbjct: 63 cagtagtctgcacattggttaggctgggcttggaaa 98
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttcatcaggccgcagc-tgagcagtagtctgcacattggt 89
|||||||||||||||||||||||| |||| | | || |||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggacatgtacagtagtctgcacattggt 80
Query: 90 taggctaggct 100
|||||| ||||
Sbjct: 81 taggctgggct 91
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 ctgcccagtgttcagactacctgttca 54
|||||||||||||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggctggga 104
||||||||||||||||||||||||| |||||||
Sbjct: 60 cagtagtctgcacattggttaggctgtgctggga 93
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttca 54
|||| |||||||||||||||||||||||||
Sbjct: 15 cgcccgcccagtgttcagactacctgttca 44
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttca 54
|||| |||||||||||||||||||||||||
Sbjct: 15 cgccggcccagtgttcagactacctgttca 44
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggct 100
||||||||||||||||||||||||| ||||
Sbjct: 63 cagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggct 100
||||||||||||||||||||||||| ||||
Sbjct: 62 cagtagtctgcacattggttaggctgggct 91
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttca 54
|||| |||||||||||||||||||||||||
Sbjct: 15 cgccggcccagtgttcagactacctgttca 44
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggct 100
||||||||||||||||||||||||| ||||
Sbjct: 63 cagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 cgcctgcccagtgttcagactacctgttca 54
||||| ||||||||||||||||||||||||
Sbjct: 15 cgccttcccagtgttcagactacctgttca 44
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 22 cctcgcctgcccagtgttcagactacctgttca 54
||||||| ||||||||||||||||||||||||
Sbjct: 12 cctcgccatcccagtgttcagactacctgttca 44
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggct 95
|||||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttaggct 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttca 54
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttcat 55
|||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcat 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttcat 55
|||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcat 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttcat 55
|||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcat 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 gcccagtgttcagactacctgttca 54
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttca 54
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggc 94
||||||||||||||||||||||||
Sbjct: 62 cagtagtctgcacattggttaggc 85
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttca 54
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttca 54
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttca 54
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 cccagtgttcagactacctgttca 54
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttag 92
||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttag 82
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gcccagtgttcagactacctgtt 52
|||||||||||||||||||||||
Sbjct: 19 gcccagtgttcagactacctgtt 41
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus norvegicus
(Norway rat)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 71 cagtagtctgcacattggttaggctaggct 100
|||||||| |||||||||||||||| ||||
Sbjct: 58 cagtagtcagcacattggttaggctgggct 87
