miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gggtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcag 62
Query: 61 caagtatactgccgcagaaa 80
||||||||||||||||||||
Sbjct: 63 caagtatactgccgcagaaa 82
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 109 bits (55), Expect = 6e-24
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 gtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagca 62
||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgtgcagtcagaa-aaagcaatcagca 63
Query: 63 agtatactgccgcagaaat 81
|||||||||||||||||||
Sbjct: 64 agtatactgccgcagaaat 82
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 79.8 bits (40), Expect = 5e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 3 gtgtttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcagc 61
|||||||| |||||||||||||||||||||||||||| | | | || ||||||||||||
Sbjct: 5 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagc 64
Query: 62 aagtatactgcc 73
||||||||||||
Sbjct: 65 aagtatactgcc 76
