miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
          Length = 78

 Score =  123 bits (62), Expect = 3e-28
 Identities = 74/78 (94%)
 Strand = Plus / Plus

                                                                      
Query: 2  ccttggtgcacatacttctttatgtacccatatgaacatatgatagctatggaatgtaaa 61
          |||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 1  ccttagtgtacatacttctttatgtacccatatggacatatgataactatggaatgtaaa 60

                            
Query: 62 gaagtatgtattcttggt 79
          ||||||||||||||||||
Sbjct: 61 gaagtatgtattcttggt 78




>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
          (Japanese medaka)
          Length = 78

 Score =  113 bits (57), Expect = 3e-25
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtatgt 69

               
Query: 71 attct 75
          |||||
Sbjct: 70 attct 74




>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 77

 Score = 93.7 bits (47), Expect = 3e-19
 Identities = 60/63 (95%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaat-gctatggaatgtaaagaagtatgt 68

             
Query: 71 att 73
          |||
Sbjct: 69 att 71




>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
          (cape rock hyrax)
          Length = 76

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 64/69 (92%), Gaps = 2/69 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          |||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacata--aatgctatggaatgtaaagaagtatgt 67

                   
Query: 71 attcttggt 79
          ||| |||||
Sbjct: 68 atttttggt 76




>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
          (European shrew)
          Length = 77

 Score = 89.7 bits (45), Expect = 5e-18
 Identities = 58/61 (95%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacata-gaatgctatggaatgtaaagaagtatgt 68

           
Query: 71 a 71
          |
Sbjct: 69 a 69




>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
          (rhesus monkey)
          Length = 77

 Score = 85.7 bits (43), Expect = 7e-17
 Identities = 59/63 (93%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          |||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacata-caaggctatggaatgtaaagaagtatgt 68

             
Query: 71 att 73
          |||
Sbjct: 69 att 71




>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 85.7 bits (43), Expect = 7e-17
 Identities = 64/70 (91%), Gaps = 2/70 (2%)
 Strand = Plus / Plus

                                                                      
Query: 10 cacatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatg 69
          ||||||||||||||| ||||||||||||| ||  | ||||||||||||||||||||||||
Sbjct: 9  cacatacttctttatatacccatatgaactta--acagctatggaatgtaaagaagtatg 66

                    
Query: 70 tattcttggt 79
          |||| |||||
Sbjct: 67 tatttttggt 76




>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
          carolinensis (green anole)
          Length = 77

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  gcacatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtat 68
          ||||||||||||||||||||||||||||| |||  || | ||||||||||||||||||||
Sbjct: 8  gcacatacttctttatgtacccatatgaagatacaat-gttatggaatgtaaagaagtat 66

               
Query: 69 gtatt 73
          |||||
Sbjct: 67 gtatt 71




>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
          mouse)
          Length = 77

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 57/64 (89%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 cacatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatg 69
          ||||||||||||||| | ||||||||||| |   | ||||||||||||||||||||||||
Sbjct: 9  cacatacttctttatatgcccatatgaacctgcta-agctatggaatgtaaagaagtatg 67

              
Query: 70 tatt 73
          ||||
Sbjct: 68 tatt 71




>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 47 gctatggaatgtaaagaagtatgtattcttgg 78
          ||||||||||||||||||||||||||| ||||
Sbjct: 44 gctatggaatgtaaagaagtatgtatttttgg 75




>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 76

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 agctatggaatgtaaagaagtatgtat 72
          |||||||||||||||||||||||||||
Sbjct: 43 agctatggaatgtaaagaagtatgtat 69




>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
          rock hyrax)
          Length = 77

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 agctatggaatgtaaagaagtatgtat 72
          |||||||||||||||||||||||||||
Sbjct: 44 agctatggaatgtaaagaagtatgtat 70




>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
          (chicken)
          Length = 77

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 55/63 (87%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          |||||||||||||| | ||||||||||| |   | | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctggca-atctatggaatgtaaagaagtatgt 68

             
Query: 71 att 73
          |||
Sbjct: 69 att 71




>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
          purpuratus
          Length = 80

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 48 ctatggaatgtaaagaagtatgtatt 73
          ||||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74




>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 acatacttctttatgtacccatatgaacatatgatagctatggaatgtaaagaagtatgt 70
          |||||||||||||| | ||||||||||||   |  | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacacgagcaa-ctatggaatgtaaagaagtatgt 68

            
Query: 71 at 72
          ||
Sbjct: 69 at 70




>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
          (American pika)
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 ctatggaatgtaaagaagtatgta 71
          ||||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatgta 69




>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 76

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 49 tatggaatgtaaagaagtatgtat 72
          ||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69




>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
          spiralis
          Length = 75

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tatggaatgtaaagaagtatgta 71
          |||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67




>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
          (southern root-knot nematode)
          Length = 93

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tatggaatgtaaagaagtatgta 71
          |||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85




>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
          japonica
          Length = 87

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tatggaatgtaaagaagtatgta 71
          |||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79




>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
          remanei
          Length = 79

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tatggaatgtaaagaagtatgta 71
          |||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71




>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
          briggsae
          Length = 79

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tatggaatgtaaagaagtatgta 71
          |||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71




>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
          pacificus
          Length = 82

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tatggaatgtaaagaagtatgta 71
          |||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74




>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
          (small-eared galago)
          Length = 77

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 acatacttctttatgtacccatatgaa 37
          ||||||||| |||||||||||||||||
Sbjct: 10 acatacttcgttatgtacccatatgaa 36




>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
          M
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 ctatggaatgtaaagaagtatg 69
          ||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69




>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
          S
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 ctatggaatgtaaagaagtatg 69
          ||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69