miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48560_gma-miR168:pmrd
          Length = 125

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 99/113 (87%), Gaps = 5/113 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcggtctctaattcgcttggtgcaggtcgggaaccgatcttcccgcgcgtaatgga--tg 61
           |||||||||||||||||||||||||||||||||||| | ||  |||||| ||||||   |
Sbjct: 7   gcggtctctaattcgcttggtgcaggtcgggaaccggtttt--cgcgcggaatggaggag 64

                                                                
Query: 62  ccgttggcggcggcgaatttggatcccgccttgcatcaaatgaatcggaggcc 114
           | || | ||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct: 65  cggtcgccggcgccgaa-ttggatcccgccttgcatcaactgaatcggaggcc 116




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 6  ggtctctaattcgcttggtgcaggtcgggaaccga 40
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccga 35



 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 74  gcgaatttggatcccgccttgcatcaaatgaatcggag 111
           |||||||  |||||||||||||||||| ||||||||||
Sbjct: 90  gcgaattccgatcccgccttgcatcaactgaatcggag 127




>54388_rco-miR168:pmrd
          Length = 156

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 80  ttggatcccgccttgcatcaaatgaatcg 108
           ||||||||||||||||||||| |||||||
Sbjct: 113 ttggatcccgccttgcatcaactgaatcg 141




>51651_ptc-miR168b:pmrd
          Length = 136

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 80  ttggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||||| ||||||||||
Sbjct: 104 ttggatcccgccttgcatcaactgaatcggag 135




>51650_ptc-miR168a:pmrd
          Length = 160

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 80  ttggatcccgccttgcatcaaatgaatcggagg 112
           ||||||||||||||||||||| |||||||||||
Sbjct: 128 ttggatcccgccttgcatcaactgaatcggagg 160



 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 6  ggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaac 32




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 80  ttggatcccgccttgcatcaaatgaatcgga 110
           ||||||||||||||||||||| |||||||||
Sbjct: 92  ttggatcccgccttgcatcaactgaatcgga 122



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaacc 35




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 80  ttggatcccgccttgcatcaaatgaatcgga 110
           ||||||||||||||||||||| |||||||||
Sbjct: 97  ttggatcccgccttgcatcaactgaatcgga 127



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 attcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40




>55000_zma-miR168b:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 4  gcggtctctaattcgcttggtgcaggtcgggaac 37
          ||||||||  ||||||||||||||||||||||||
Sbjct: 7  gcggtctcggattcgcttggtgcaggtcgggaac 40




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 tcgcttggtgcaggtcgggaacc 38
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaacc 23



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ttggatcccgccttgcatcaa 100
           |||||||||||||||||||||
Sbjct: 80  ttggatcccgccttgcatcaa 100




>54999_zma-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>54637_sof-miR168b:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>54636_sof-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ttggatcccgccttgcatcaa 100
           |||||||||||||||||||||
Sbjct: 116 ttggatcccgccttgcatcaa 136




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ttggatcccgccttgcatcaa 100
           |||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaa 114




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ttggatcccgccttgcatcaa 100
           |||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaa 114




>48873_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48872_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48871_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 82  ggatcccgccttgcatcaaatgaatcggag 111
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48649_hte-miR168:pmrd
          Length = 140

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>48349_bna-miR168:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tcgcttggtgcaggtcgggaac 37
          ||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaac 39




>54665_stu-miR168:pmrd
          Length = 133

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 16 tcgcttggtgcaggtcggga 35
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54546_sly-miR168:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 16 tcgcttggtgcaggtcggga 35
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20