miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 3 cgcggtctctaattcgcttggtgcaggtcgggaacc 38
||||||||||||||||||||||||||||||||||||
Sbjct: 6 cgcggtctctaattcgcttggtgcaggtcgggaacc 41
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggaggcc 114
||||||||||||||||||||| |||||||||||||
Sbjct: 78 ttggatcccgccttgcatcaactgaatcggaggcc 112
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 6 ggtctctaattcgcttggtgcaggtcgggaaccga 40
|||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaaccga 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 74 gcgaatttggatcccgccttgcatcaaatgaatcggag 111
||||||| |||||||||||||||||| ||||||||||
Sbjct: 98 gcgaattccgatcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||| ||||||||||
Sbjct: 112 ttggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcg 108
||||||||||||||||||||| |||||||
Sbjct: 113 ttggatcccgccttgcatcaactgaatcg 141
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||||||||||||||
Sbjct: 92 ttggatcccgccttgcatcaaatgaatcggag 123
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggaggcc 114
||||||||||||||||||||| |||||||||||||
Sbjct: 136 ttggatcccgccttgcatcaactgaatcggaggcc 170
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 82 ggatcccgccttgcatcaaatgaatcggaggcc 114
||||||||||||||||||| |||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggcc 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||| ||||||||||
Sbjct: 33 ttggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||| ||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||| ||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||| ||||||||||
Sbjct: 95 ttggatcccgccttgcatcaactgaatcggag 126
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||||||||| ||||||||||
Sbjct: 92 ttggatcccgccttgcatcaactgaatcggag 123
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcgga 110
||||||||||||||||||||| |||||||||
Sbjct: 94 ttggatcccgccttgcatcaactgaatcgga 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcgga 110
||||||||||||||||||||| |||||||||
Sbjct: 98 ttggatcccgccttgcatcaactgaatcgga 128
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcagattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 ctctaattcgcttggtgcaggtcgggaacc 38
|||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggaggc 113
|||||||| |||||||||||| |||||||||||
Sbjct: 69 ttggatcctgccttgcatcaatcgaatcggaggc 102
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 80 ttggatcccgccttgcatcaaatgaatcggag 111
|||| |||||||||||||||| ||||||||||
Sbjct: 91 ttggctcccgccttgcatcaactgaatcggag 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcggga 35
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 85 tcccgccttgcatcaaatgaatcggag 111
|||||||||||||||| ||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 82 ggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 82 ggatcccgccttgcatcaaatgaatcggag 111
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
