miRNEST 2.0, an integrative microRNA resource :: BLAST
>51650_ptc-miR168a:pmrd
Length = 160
Score = 159 bits (80), Expect = 9e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 15 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 75 tcgacatgactggttgttgt 94
||||||||||||||||||||
Sbjct: 61 tcgacatgactggttgttgt 80
Score = 85.7 bits (43), Expect = 1e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 132 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 174
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
>54375_pts-miR168b:pmrd
Length = 140
Score = 119 bits (60), Expect = 8e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctcgacatgac 84
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggctggacatgac 60
Query: 85 tggttgtt 92
||||||||
Sbjct: 61 tggttgtt 68
Score = 69.9 bits (35), Expect = 7e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 132 gaatagcgaattggatcccgccttgcatcaactga 166
|||||||||||||||||||||||||||||||||||
Sbjct: 106 gaatagcgaattggatcccgccttgcatcaactga 140
>51651_ptc-miR168b:pmrd
Length = 136
Score = 113 bits (57), Expect = 5e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 15 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 74
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 75 t 75
|
Sbjct: 61 t 61
Score = 69.9 bits (35), Expect = 7e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 139 gaattggatcccgccttgcatcaactgaatcggag 173
|||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135
>48560_gma-miR168:pmrd
Length = 125
Score = 93.7 bits (47), Expect = 5e-20
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 138 cgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 184
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 124
Score = 60.0 bits (30), Expect = 6e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 13 gcggtctctgattcgcttggtgcaggtcgggaac 46
||||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>54374_pts-miR168a:pmrd
Length = 118
Score = 85.7 bits (43), Expect = 1e-17
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 75
|||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 139 gaattggatcccgccttgcatcaactga 166
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 85.7 bits (43), Expect = 1e-17
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 75
|||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 139 gaattggatcccgccttgcatcaactga 166
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
>54388_rco-miR168:pmrd
Length = 156
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 7 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 51
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
Score = 69.9 bits (35), Expect = 7e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 139 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaag 185
|||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156
>46958_ath-miR168b:pmrd
Length = 124
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 7 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 51
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 147 tcccgccttgcatcaactgaatcggaggccgcggtga 183
||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88 tcccgtcttgtatcaactgaatcggagtccgaggtga 124
>48349_bna-miR168:pmrd
Length = 133
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 11 cggcggtctctgattcgcttggtgcaggtcgggaactgatt 51
|||||| |||||| |||||||||||||||||||||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 141 attggatcccgccttgcatcaactgaatcgga 172
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaactgattcggc 55
||||||||||||||||||||||||| |||||||
Sbjct: 10 gattcgcttggtgcaggtcgggaaccaattcggc 43
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 141 attggatcccgccttgcatcaactgaatcgga 172
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 gattcgcttggtgcaggtcgggaactgattcggc 55
||||||||||||||||||||||||| |||||||
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48
>54802_vvi-miR168:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 145 gatcccgccttgcatcaactgaatcggag 173
|||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
Score = 56.0 bits (28), Expect = 1e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 15 ggtctctgattcgcttggtgcaggtcgggaac 46
||||||| ||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 141 attggatcccgccttgcatcaactga 166
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcgggaactgattcggc 55
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggc 31
>54546_sly-miR168:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcgggaactgattcggcg 56
|||||||||||||||||||| || ||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctcattcggcg 32
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcgggaactg 48
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 ggatcccgccttgcatcaactgaatcggag 173
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 142 ttggatcccgccttgcatcaactga 166
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 tcgcttggtgcaggtcggga 44
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
