miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51762_ptc-miR408:pmrd
Length = 105
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 acagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 acagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacttgttt 64
Query: 61 tggctctacccatgcactgcctcttccctggcttgtggct 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tggctctacccatgcactgcctcttccctggcttgtggct 104
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 12 cggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctaccc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctaccc 60
Query: 72 atgcactgcctcttccctg 90
|||||||||||||||||||
Sbjct: 61 atgcactgcctcttccctg 79
>54389_rco-miR408:pmrd
Length = 129
Score = 95.6 bits (48), Expect = 6e-21
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 66
||||| |||||||||||| |||||||||| ||||||||||||| | |||||||||||
Sbjct: 25 aagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctc 84
Query: 67 tacccatgcactgcctcttccctggctt 94
||||| ||||||||||||||||||||||
Sbjct: 85 tacccctgcactgcctcttccctggctt 112
>48428_cpt-miR408:pmrd
Length = 100
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 66
|||||||||||||||||||||||||||||| | | |||||| || || |||||||||||
Sbjct: 7 aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 64
Query: 67 tacccatgcactgcctcttccctggct 93
|||||||||||||||||||||||||
Sbjct: 65 ctcccatgcactgcctcttccctggct 91
>54892_vvi-miR408:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 56 tgttttggctctacccatgcactgcctcttccctggct 93
|||||| |||||||||||||||||||||||||||||||
Sbjct: 61 tgtttttgctctacccatgcactgcctcttccctggct 98
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 56 tgttttggctctacccatgcactgcctcttccctggct 93
||||||| ||||||||||||||||||||||||||||||
Sbjct: 42 tgttttgtctctacccatgcactgcctcttccctggct 5
>47031_ath-miR408:pmrd
Length = 218
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 56 tgttttggctctacccatgcactgcctcttccctggct 93
||||||| ||||||||||||||||||||||||||||||
Sbjct: 104 tgttttgtctctacccatgcactgcctcttccctggct 141
>51347_ppe-miR408:pmrd
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 56 tgttttggctctacccatgcactgcctcttccctggct 93
|||| ||||||||| |||||||||||||||||||||||
Sbjct: 59 tgttgtggctctactcatgcactgcctcttccctggct 96
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 catgcactgcctcttccctggctt 94
||||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggctt 115
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 ccatgcactgcctcttccctggct 93
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>54649_sof-miR408d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 acccatgcactgcctcttccctggct 93
|||| |||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggct 197
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 atgcactgcctcttccctggct 93
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 atgcactgcctcttccctggct 93
||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ccatgcactgcctcttccctgg 91
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173
>54690_tae-miR408:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157
>54648_sof-miR408c:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tgcactgcctcttccctggct 93
|||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174
