miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 182 bits (92), Expect = 1e-45
Identities = 145/159 (91%), Gaps = 4/159 (2%)
Strand = Plus / Plus
Query: 1 ttgcctttatctgcatttgcacctgcatcttattgcgtttggtttggtattgaatccaaa 60
||||||||||||||||||||||||||||||| ||||||||| |||| | |||| |||| |
Sbjct: 10 ttgcctttatctgcatttgcacctgcatctt-ttgcgtttgttttgtttttgactccaca 68
Query: 61 aaacaaatccaagttccgtgccgatccagaatgtgggacaattagatatggaaactaata 120
|| ||||| |||||| || |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 69 aacaaaatc-aagttctgt--cgatacagtatgtgggacaattagatatggaaactaata 125
Query: 121 agcttagttgaggtgcaggtgcaagtgcaggtgaatgcc 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agcttagttgaggtgcaggtgcaagtgcaggtgaatgcc 164
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ttgcctttatctgcatttgcacctgcatctta 32
||||||||||||||||||||||||||| ||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcacctta 41
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 128 ttgaggtgcaggtgcaagtgcaggtgaatgcc 159
|||||||||||||||| |||||||||||||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgcc 136
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ttgcctttatctgcatttgcacctgcatctta 32
||||||||||||||||||||||||||| ||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 cctttatctgcatttgcacctgcatcttatt 34
|||||||||||||||||||||||| ||||||
Sbjct: 13 cctttatctgcatttgcacctgcaccttatt 43
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 gcctttatctgcatttgcacctgcatcttat 33
||||||||||||||||||||||||| |||||
Sbjct: 12 gcctttatctgcatttgcacctgcaccttat 42
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 cctttatctgcatttgcacctgca 27
||||||||||||||||||||||||
Sbjct: 12 cctttatctgcatttgcacctgca 35
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 cctttatctgcatttgcacctgca 27
||||||||||||||||||||||||
Sbjct: 146 cctttatctgcatttgcacctgca 123
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tttatctgcatttgcacctgca 27
||||||||||||||||||||||
Sbjct: 16 tttatctgcatttgcacctgca 37
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tttatctgcatttgcacctgca 27
||||||||||||||||||||||
Sbjct: 11 tttatctgcatttgcacctgca 32
