miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 311 bits (157), Expect = 2e-84
Identities = 170/173 (98%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgcatcttattgcggttgtattgttttt 68
|||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcatctt-ttgcgtttgttttgttttt 59
Query: 69 gactccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gactccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatggaaa 119
Query: 129 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 73.8 bits (37), Expect = 8e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgcatctta 49
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcacctta 41
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 145 aggtgcaggtgcaagtgcaggtgaatgccattttggt 181
||||||||||| ||||||||||||||||||||||||
Sbjct: 141 aggtgcaggtgtgagtgcaggtgaatgccattttggt 177
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgcatctta 49
||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 1 gccaacatgttgcctttatctgcatttgcacctgcacctta 41
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 142 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 181
|||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 15 atgttgcctttatctgcatttgcacctgcatcttatt 51
||||| |||||||||||||||||||||||| ||||||
Sbjct: 7 atgtttcctttatctgcatttgcacctgcaccttatt 43
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 56.0 bits (28), Expect = 2e-07
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgca 44
||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gccaatatgtt-cctttatctgcatttgcacctgca 35
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 gcctttatctgcatttgcacctgcatcttat 50
||||||||||||||||||||||||| |||||
Sbjct: 12 gcctttatctgcatttgcacctgcaccttat 42
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 50.1 bits (25), Expect = 1e-05
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 12 aatatgttgcctttatctgcatttgcacctgca 44
|||||||| ||||||||||||||||||||||||
Sbjct: 154 aatatgtt-cctttatctgcatttgcacctgca 123
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tttatctgcatttgcacctgca 44
||||||||||||||||||||||
Sbjct: 16 tttatctgcatttgcacctgca 37
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tttatctgcatttgcacctgca 44
||||||||||||||||||||||
Sbjct: 11 tttatctgcatttgcacctgca 32
