miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 216 bits (109), Expect = 6e-56
Identities = 112/113 (99%)
Strand = Plus / Plus
Query: 15 tggagaagtagacacggcgtgatattggtccggctcatcttctgtgcataagcatctgaa 74
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaa 60
Query: 75 gttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 113
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 81.8 bits (41), Expect = 2e-15
Identities = 94/110 (85%), Gaps = 5/110 (4%)
Strand = Plus / Plus
Query: 15 tggagaagtagacacggcgtgatattggtccggctcatcttctgtgcataagcatctgaa 74
|||||||| ||||| |||||| ||||| |||||||| |||||||| || ||||| |||
Sbjct: 1 tggagaagcagacatggcgtggtattgatccggctcttcttctgt--atttgcatcagaa 58
Query: 75 gttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 124
||| ||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 59 gtttttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 105
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 93 cgagccgaatcaatatcactcttgtatgcttctt 126
||||||||||||||||||||||||||||||||||
Sbjct: 85 cgagccgaatcaatatcactcttgtatgcttctt 118
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 17 gagaagtagacacggcgtgatattggtccggctcatct 54
|||||||||||| ||||||||||||||||| |||||||
Sbjct: 3 gagaagtagacatggcgtgatattggtccgactcatct 40
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 89 aagacgagccgaatcaatatcactcttgtatgcttctt 126
||||||||||||| ||||||||||||||||||||||||
Sbjct: 66 aagacgagccgaaccaatatcactcttgtatgcttctt 103
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 15 tggagaagtagacacggcgtgatattggtccggctcatcttct 57
|||||||||||||| || ||| ||||||| |||||||||||||
Sbjct: 1 tggagaagtagacatggtgtggtattggttcggctcatcttct 43
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 90 agacgagccgaatcaatatcactcttgtatgcttc 124
|||||||||||||||||||||||||||| ||||||
Sbjct: 80 agacgagccgaatcaatatcactcttgtttgcttc 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 20 aagtagacacggcgtgatattggtccggctcatct 54
||||| ||| |||||||||||| ||||||||||||
Sbjct: 6 aagtatacatggcgtgatattgatccggctcatct 40
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 90 agacgagccgaatcaatatcactcttgtatgcttctt 126
|||||||||||||||||||||||| |||||| |||||
Sbjct: 77 agacgagccgaatcaatatcactcctgtatgtttctt 113
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 cgagccgaatcaatatcactcttgtat 119
|||||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgtat 115
>RF00692;MIR171_2;CU571241.2/65608-65725 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 aagacgagccgaatcaatatcactc 113
|||||||||||||||||||||||||
Sbjct: 80 aagacgagccgaatcaatatcactc 104
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 gagccgaatcaatatcactcttgt 117
||||||||||||||||||||||||
Sbjct: 73 gagccgaatcaatatcactcttgt 96
