miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52182_ptc-miRf10360-akr:pmrd
Length = 106
Score = 89.7 bits (45), Expect = 1e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 11 ggggtgatcattttcggttcggttcggtttttatcaaaaaaagtaaccaaaccgaaa 67
|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 ggggtgatcattttcgattcggttcggtttttataaaaaaaaataaccaaaccgaaa 57
>54327_ptc-miRf12505-akr:pmrd
Length = 143
Score = 73.8 bits (37), Expect = 6e-14
Identities = 50/53 (94%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 15 tgatcattttcggttcggttcggtttttatcaaa-aaaagtaaccaaaccgaa 66
||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 143 tgatcattttcggttcgattcggtttttatcaaaaaaaagtaatcaaaccgaa 91
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttttcggttcggttcggttttt 42
||||||||||||||||||||||
Sbjct: 80 ttttcggttcggttcggttttt 101
>54261_ptc-miRf12439-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttcggttcggttcggttttt 42
||||||||||||||||||||
Sbjct: 16 ttcggttcggttcggttttt 35
>54026_ptc-miRf12204-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttcggttcggttcggttttt 42
||||||||||||||||||||
Sbjct: 16 ttcggttcggttcggttttt 35
>53912_ptc-miRf12090-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttcggttcggttcggttttt 42
||||||||||||||||||||
Sbjct: 16 ttcggttcggttcggttttt 35
>53910_ptc-miRf12088-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttcggttcggttcggttttt 42
||||||||||||||||||||
Sbjct: 16 ttcggttcggttcggttttt 35
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttcggttcggttcggttttt 42
||||||||||||||||||||
Sbjct: 103 ttcggttcggttcggttttt 122
>53024_ptc-miRf11202-akr:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 cttataaaaccgaaaccgaa 230
||||||||||||||||||||
Sbjct: 41 cttataaaaccgaaaccgaa 60
