miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51759_ptc-miR403a:pmrd
Length = 132
Score = 220 bits (111), Expect = 3e-58
Identities = 125/132 (94%)
Strand = Plus / Plus
Query: 21 aggcatatttcaggtttgtgcatgaatctaatatagctnnnnnnntcccatcaaacacaa 80
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 aggcatatttcaggtttgtgcatgaatctaatatagctaaaaaaatcccatcaaacacaa 60
Query: 81 attaaaatactagatagcaatcagcactagtttagtatagtattagattcacgcacaaac 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaaaatactagatagcaatcagcactagtttagtatagtattagattcacgcacaaac 120
Query: 141 tcgtaatctgtc 152
||||||||||||
Sbjct: 121 tcgtaatctgtc 132
>48413_bst-miR403:pmrd
Length = 124
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 122 attagattcacgcacaaactcgtaatctgtctttt 156
|||||||||||||||||||||||||||||||||||
Sbjct: 89 attagattcacgcacaaactcgtaatctgtctttt 123
>51353_ppl-miR403:pmrd
Length = 135
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 122 attagattcacgcacaaactcgtaatctgtcttt 155
||||||||||||||||||||||||||||||||||
Sbjct: 102 attagattcacgcacaaactcgtaatctgtcttt 135
>47024_ath-miR403:pmrd
Length = 135
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 122 attagattcacgcacaaactcgtaatctgtcttt 155
||||||||||||||||||||||||||||||||||
Sbjct: 102 attagattcacgcacaaactcgtaatctgtcttt 135
>54891_vvi-miR403f:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
|||||||||||||||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>48424_cpa-miR403:pmrd
Length = 126
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 124 tagattcacgcacaaactcgtaatctgtctt 154
|||||||||||||||||||||||||||||||
Sbjct: 91 tagattcacgcacaaactcgtaatctgtctt 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 gaggcatatttcaggtttgtgcatgaatctaat 52
||||||||||||| |||||||| |||||||||
Sbjct: 5 gaggcatatttcaagtttgtgcgcgaatctaat 37
>54669_stu-miR403:pmrd
Length = 106
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 16 ggaagaggcatatttcaggtttgtgcatgaatctaa 51
||||||||||||||||| |||||||| |||||||||
Sbjct: 1 ggaagaggcatatttcacgtttgtgcgtgaatctaa 36
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 124 tagattcacgcacaaactcgtaatctgtctttttc 158
|||||||||||||||||||||||| ||| ||||||
Sbjct: 72 tagattcacgcacaaactcgtaatatgtatttttc 106
>54562_sly-miR403:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 16 ggaagaggcatatttcaggtttgtgcatgaatctaa 51
||||||||||||||||| |||||||| |||||||||
Sbjct: 17 ggaagaggcatatttcacgtttgtgcgtgaatctaa 52
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 124 tagattcacgcacaaactcgtaatctgtctttttcaat 161
||||||||||||||| |||||||| || ||||| ||||
Sbjct: 88 tagattcacgcacaagctcgtaatatggcttttccaat 125
>54888_vvi-miR403c:pmrd
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtc 152
|||||||||||||||||||||| |||||||
Sbjct: 85 ttagattcacgcacaaactcgtgatctgtc 114
>54889_vvi-miR403d:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>54887_vvi-miR403b:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>54890_vvi-miR403e:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtc 152
||||||||||||||||||||| |||||||
Sbjct: 85 ttagattcacgcacaaactcgcgatctgtc 114
>54886_vvi-miR403a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgt 144
||||||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaactcgt 106
>51760_ptc-miR403b:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtc 152
||||||||||||||||||||| |||||||
Sbjct: 71 ttagattcacgcacaaactcgcgatctgtc 100
>51761_ptc-miR403c:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcg 143
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
