miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 218 bits (110), Expect = 2e-56
Identities = 124/131 (94%)
Strand = Plus / Plus
Query: 23 gcatatttcaggtttgtgcatgaatctaatatagctnnnnnnntcccatcaaacacaaat 82
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gcatatttcaggtttgtgcatgaatctaatatagctaaaaaaatcccatcaaacacaaat 60
Query: 83 taaaatactagatagcaatcagcactagtttagtatagtattagattcacgcacaaactc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaatactagatagcaatcagcactagtttagtatagtattagattcacgcacaaactc 120
Query: 143 gtaatctgtct 153
|||||||||||
Sbjct: 121 gtaatctgtct 131
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 63.9 bits (32), Expect = 7e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 122 attagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||||||||||||||
Sbjct: 68 attagattcacgcacaaactcgtaatctgtct 99
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 63.9 bits (32), Expect = 7e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 122 attagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||||||||||||||
Sbjct: 87 attagattcacgcacaaactcgtaatctgtct 118
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
|||||||||||||||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 124 tagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||||||||||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtct 146
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
|||||||||||||||||||||| ||||||||
Sbjct: 78 ttagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||| ||||||||
Sbjct: 69 ttagattcacgcacaaactcgcgatctgtct 99
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatct 149
|||||||||||||||||||||| ||||
Sbjct: 75 ttagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgtaatctgtct 153
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 ttagattcacgcacaaactcgt 144
||||||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaactcgt 106
