miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 170 bits (86), Expect = 3e-42
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 19 gtatggtaccctgttacgtatactgaaggtataccggacagttttataatgcactcagga 78
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gtatggcaccctgttacgtatactgaaggtataccggacagttttataatgcactcagga 31
Query: 79 tacatttagtatacgtacagggtgccacgc 108
||||||||||||||||||||||||||||||
Sbjct: 30 tacatttagtatacgtacagggtgccacgc 1
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 75.8 bits (38), Expect = 1e-13
Identities = 64/73 (87%), Gaps = 6/73 (8%)
Strand = Plus / Minus
Query: 28 cctgttacgtatactgaaggtataccggacagttttataatgcactcaggatacatttag 87
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct: 75 cctgttacgtatactgaaggtataccggacag------aaaacactcaggatacattcag 22
Query: 88 tatacgtacaggg 100
|||||||||||||
Sbjct: 21 tatacgtacaggg 9
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 29 ctgttacgtatactgaaggtataccggacagttttataatgcactcaggatacatttagt 88
|||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct: 78 ctgttacgtatactgaaggtataccggaca--agaatcgcgcactcaggatacattcagt 21
Query: 89 atacgtacag 98
||||||||||
Sbjct: 20 atacgtacag 11
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 30 tgttacgtatactgaaggtataccgga 56
|||||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccgga 47
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 69 gcactcaggatacatttagtatacgt 94
|||||||||||||||| |||||||||
Sbjct: 40 gcactcaggatacattcagtatacgt 15
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 30 tgttacgtatactgaaggtataccgga 56
|||||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccgga 47
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 31 gttacgtatactgaaggtataccgga 56
||||||||||||||||||||||||||
Sbjct: 73 gttacgtatactgaaggtataccgga 48
