miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 141 bits (71), Expect = 3e-33
Identities = 129/148 (87%), Gaps = 9/148 (6%)
Strand = Plus / Plus
Query: 4 gaagagacaggacaaaggctgggaaaaggcagagcaagaatgtagctattgacagaaa-t 62
||||||||||||||||||||||||| |||||| ||| ||||| |||||| ||||||| |
Sbjct: 3 gaagagacaggacaaaggctgggaacaggcagggcacgaatggagctatcaacagaaaat 62
Query: 63 ggtgaagtgagaatgagaggagagagata--------tctgttgtggctacgctcatgca 114
||| |||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct: 63 ggtaaagtgagaatgaaaggagagagagagagagagatctgttgtggctacgctcatgca 122
Query: 115 ctgcctcttccctggctctctctctttc 142
||||||||||||||||||| ||||||||
Sbjct: 123 ctgcctcttccctggctctgtctctttc 150
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 93 ctgttgtggctacgctcatgcactgcctcttccctggct 131
||||||||||| | |||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctctctctctttctt 144
||||||||||||||||||||||||||| ||||||
Sbjct: 86 tgcactgcctcttccctggctctctctttttctt 119
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggctctctctct 139
||||||||||||||||||||||||| |||||
Sbjct: 86 catgcactgcctcttccctggctctgtctct 116
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggctctctct 137
|||||||||||||||||||||||| ||||
Sbjct: 86 catgcactgcctcttccctggctccctct 114
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 94 tgttgtggctacgctcatgcactgcctcttccctggc 130
|||||||||| ||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 catgcactgcctcttccctggct 131
|||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggct 101
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctc 166
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 tgcactgcctcttccctggctc 132
||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164
