miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40338_rco-MIR159:mirbase
Length = 180
Score = 357 bits (180), Expect = 2e-99
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 9 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
Query: 69 tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 120
Query: 129 ctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctctacatct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctctacatct 180
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 141 bits (71), Expect = 2e-34
Identities = 160/187 (85%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 5 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64
Query: 68 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 127
||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 65 atggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcata 124
Query: 128 tctcaggagcttcatta-ccttgtattagatccttgtttggattgaagggagctctacat 186
||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 125 tctcaggagctgcattatccaagt-ttagatccttgtttggattgaagggagctctacac 183
Query: 187 ctctctc 193
|||||||
Sbjct: 184 ctctctc 190
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 135 bits (68), Expect = 1e-32
Identities = 152/177 (85%), Gaps = 6/177 (3%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||| | || || ||||||||| |||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 66
Query: 68 atggatcccacagccctataagca-gagattataattttggataggcttgtggcttgcat 126
||| ||||||||||||||| | || || | ||||| ||| ||| || |||||||||
Sbjct: 67 atgaatcccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcat 121
Query: 127 atctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 183
||||||||||||| ||||||| | ||||||| || |||||||||||||||||||||
Sbjct: 122 atctcaggagctttattacctaatgttagatctttttttggattgaagggagctcta 178
>40397_ahy-MIR159:mirbase
Length = 197
Score = 109 bits (55), Expect = 8e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 10 agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 69
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||
Sbjct: 1 agtggagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctat 60
Query: 70 ggatcccacag 80
|||||||||||
Sbjct: 61 ggatcccacag 71
Score = 60.0 bits (30), Expect = 7e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 133 ggagcttcattaccttgtattagatccttgtttggattgaagggagctctacat 186
|||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 127 ggagcttcattacctttccacagatccttatttggattgaagggagctctacat 180
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 105 bits (53), Expect = 1e-23
Identities = 147/176 (83%), Gaps = 8/176 (4%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 68 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 127
|||||| |||||| ||||| || | | | ||||||| ||| ||||||||||
Sbjct: 67 atggat-ccacagtcctat------ctatca-actgaaggataggtttgcggcttgcata 118
Query: 128 tctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 183
|||||||||||| ||| ||| | |||||||| | |||||||||||||||||||||
Sbjct: 119 tctcaggagctttattgcctaatgttagatccctttttggattgaagggagctcta 174
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 103 bits (52), Expect = 5e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 68 atggatcc 75
||||||||
Sbjct: 67 atggatcc 74
>41218_csi-MIR159:mirbase
Length = 216
Score = 99.6 bits (50), Expect = 8e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 6 aaggagtggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctga 64
|||||||||||||||||||||||||| ||||| ||| | | ||||| |||||||||||||
Sbjct: 6 aaggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctga 65
Query: 65 gctatggatcccacagccctat 86
|||||||||||||||| |||||
Sbjct: 66 gctatggatcccacagtcctat 87
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 107 gataggcttgtggcttgcatatctcaggagcttcattacc 146
|||||||||||||||||||||| || ||| ||||||||||
Sbjct: 125 gataggcttgtggcttgcatatttctggaccttcattacc 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatctct 190
|||||||||||||||||||||| |||||
Sbjct: 186 tttggattgaagggagctctacctctct 213
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 99.6 bits (50), Expect = 8e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 70
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 71 gatcccacag 80
||||||||||
Sbjct: 61 gatcccacag 70
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 99.6 bits (50), Expect = 8e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 70
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 71 gatcccacag 80
||||||||||
Sbjct: 61 gatcccacag 70
>40432_gma-MIR159a:mirbase
Length = 214
Score = 93.7 bits (47), Expect = 5e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 10 agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 69
||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78
Query: 70 ggatcccacag 80
|||||||||||
Sbjct: 79 ggatcccacag 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 158 ccttgtttggattgaagggagctctaca 185
|||| |||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctaca 197
>41922_osa-MIR159f:mirbase
Length = 188
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||||||| |||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>41919_osa-MIR159c:mirbase
Length = 197
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||| |||||||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatct 188
||||||||||||||||||||||||||
Sbjct: 152 tttggattgaagggagctctacatct 177
>39804_aly-MIR159a:mirbase
Length = 222
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatct 188
||||||||||||||||||||||||||
Sbjct: 183 tttggattgaagggagctctacatct 208
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 117 tggcttgcatatctcaggagctt 139
|||||||||||||||||||||||
Sbjct: 130 tggcttgcatatctcaggagctt 152
>40435_gma-MIR159d:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 attgagctgctgagctatggatcccacag 80
||||||||||| |||||||||||||||||
Sbjct: 7 attgagctgcttagctatggatcccacag 35
>40017_ath-MIR159b:mirbase
Length = 196
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatctctc 191
|||||||||||||||||||| ||||||||
Sbjct: 168 tttggattgaagggagctcttcatctctc 196
>42691_zma-MIR159b:mirbase
Length = 221
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctctacatct 188
|||||||||||||||||||||| |||||
Sbjct: 180 tgtttggattgaagggagctctgcatct 207
>41883_hvu-MIR159b:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctctacatct 188
|||||||||||||||||||||| |||||
Sbjct: 9 tgtttggattgaagggagctctgcatct 36
>39805_aly-MIR159b:mirbase
Length = 202
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatctct 190
|||||||||||||||||||| |||||||
Sbjct: 169 tttggattgaagggagctcttcatctct 196
>41528_sly-MIR159:mirbase
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 attgagctgctgagctatggatcccacagccctat 86
||||||||||||| |||||||| || |||||||||
Sbjct: 41 attgagctgctgacctatggattcctcagccctat 75
Score = 44.1 bits (22), Expect = 4e-05
Identities = 55/65 (84%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 121 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 178
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172
Query: 179 ctcta 183
|||||
Sbjct: 173 ctcta 177
