miRNEST 2.0, an integrative microRNA resource :: BLAST
>54777_vvi-miR159c:pmrd
Length = 190
Score = 141 bits (71), Expect = 2e-34
Identities = 160/187 (85%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 5 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64
Query: 68 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 127
||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 65 atggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcata 124
Query: 128 tctcaggagcttcatta-ccttgtattagatccttgtttggattgaagggagctctacat 186
||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 125 tctcaggagctgcattatccaagt-ttagatccttgtttggattgaagggagctctacac 183
Query: 187 ctctctc 193
|||||||
Sbjct: 184 ctctctc 190
>51603_ptc-miR159b:pmrd
Length = 187
Score = 135 bits (68), Expect = 1e-32
Identities = 152/177 (85%), Gaps = 6/177 (3%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||| | || || ||||||||| |||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 66
Query: 68 atggatcccacagccctataagca-gagattataattttggataggcttgtggcttgcat 126
||| ||||||||||||||| | || || | ||||| ||| ||| || |||||||||
Sbjct: 67 atgaatcccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcat 121
Query: 127 atctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 183
||||||||||||| ||||||| | ||||||| || |||||||||||||||||||||
Sbjct: 122 atctcaggagctttattacctaatgttagatctttttttggattgaagggagctcta 178
>51602_ptc-miR159a:pmrd
Length = 183
Score = 105 bits (53), Expect = 1e-23
Identities = 147/176 (83%), Gaps = 8/176 (4%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 68 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 127
|||||| |||||| ||||| || | | | ||||||| ||| ||||||||||
Sbjct: 67 atggat-ccacagtcctat------ctatca-actgaaggataggtttgcggcttgcata 118
Query: 128 tctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 183
|||||||||||| ||| ||| | |||||||| | |||||||||||||||||||||
Sbjct: 119 tctcaggagctttattgcctaatgttagatccctttttggattgaagggagctcta 174
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 103 bits (52), Expect = 5e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 2 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 61
Query: 68 atggatcc 75
||||||||
Sbjct: 62 atggatcc 69
>51604_ptc-miR159c:pmrd
Length = 183
Score = 103 bits (52), Expect = 5e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 68 atggatcc 75
||||||||
Sbjct: 67 atggatcc 74
>54378_pvu-miR159:pmrd
Length = 174
Score = 99.6 bits (50), Expect = 8e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 70
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 71 gatcccacag 80
||||||||||
Sbjct: 61 gatcccacag 70
>54377_pvu-miR159:pmrd
Length = 174
Score = 99.6 bits (50), Expect = 8e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 70
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 71 gatcccacag 80
||||||||||
Sbjct: 61 gatcccacag 70
>48539_gma-miR159a:pmrd
Length = 214
Score = 93.7 bits (47), Expect = 5e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 10 agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 69
||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78
Query: 70 ggatcccacag 80
|||||||||||
Sbjct: 79 ggatcccacag 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 158 ccttgtttggattgaagggagctctaca 185
|||| |||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctaca 197
>48824_osa-miR159f:pmrd
Length = 188
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||||||| |||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>48821_osa-miR159c:pmrd
Length = 197
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||| |||||||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
>48701_mtr-miR159c:pmrd
Length = 44
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatct 188
||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctacatct 26
>48728_mtr-miR319b:pmrd
Length = 42
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatct 188
|||||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctacatct 25
>46932_ath-miR159b:pmrd
Length = 196
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatctctc 191
|||||||||||||||||||| ||||||||
Sbjct: 168 tttggattgaagggagctcttcatctctc 196
>54931_zma-miR159b:pmrd
Length = 221
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 161 tgtttggattgaagggagctctacatct 188
|||||||||||||||||||||| |||||
Sbjct: 180 tgtttggattgaagggagctctgcatct 207
>54540_sly-miR159:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 52 attgagctgctgagctatggatcccacagccctat 86
||||||||||||| |||||||| || |||||||||
Sbjct: 41 attgagctgctgacctatggattcctcagccctat 75
Score = 44.1 bits (22), Expect = 4e-05
Identities = 55/65 (84%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 121 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 178
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172
Query: 179 ctcta 183
|||||
Sbjct: 173 ctcta 177
>48686_ltu-miR159:pmrd
Length = 345
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>48395_bra-miR159a:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctctaca 183
