miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 2 gctaaaggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctaaaggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgc 60
Query: 62 tgagctatggatcccacagccctataagcagagattataattttggataggcttgtggct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagctatggatcccacagccctataagcagagattataattttggataggcttgtggct 120
Query: 122 tgcatatctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcatatctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctc 180
Query: 182 tacatctctctc 193
||||||||||||
Sbjct: 181 tacatctctctc 192
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 141 bits (71), Expect = 4e-33
Identities = 160/187 (85%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 66
Query: 68 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 127
||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 67 atggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcata 126
Query: 128 tctcaggagcttcatta-ccttgtattagatccttgtttggattgaagggagctctacat 186
||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 127 tctcaggagctgcattatccaagt-ttagatccttgtttggattgaagggagctctacac 185
Query: 187 ctctctc 193
|||||||
Sbjct: 186 ctctctc 192
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 121 bits (61), Expect = 4e-27
Identities = 145/170 (85%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 73
|||||||||||||||||||||| | || || ||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 74 cccacagccctataagca-gagattataattttggataggcttgtggcttgcatatctca 132
||||||||||||| | || || | ||||| ||| ||| || |||||||||||||||
Sbjct: 61 cccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcatatctca 115
Query: 133 ggagcttcattaccttgtattagatccttgtttggattgaagggagctct 182
||||||| ||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 116 ggagctttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 119 bits (60), Expect = 1e-26
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 73
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 74 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 133
||||||||||| | || || | || ||| |||||||| || |||||||||||||
Sbjct: 73 tccacagccctacccgaagttatactttttctgggtaggcttgcggtttgcatatctcag 132
Query: 134 gagcttcattaccttgtattagatccttgtttggattgaagggagctctaca 185
||||| ||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 133 gagctgcattaccctaagcttaatccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 103 bits (52), Expect = 9e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 68 atggatcc 75
||||||||
Sbjct: 67 atggatcc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 77.8 bits (39), Expect = 5e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 67
|||||||||||||||||||||||| ||| ||||| || |||||||||||||||| ||
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacct 66
Query: 68 atggatcccacagccctat 86
|||||| || |||||||||
Sbjct: 67 atggattcctcagccctat 85
Score = 50.1 bits (25), Expect = 1e-05
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 121 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 178
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 183
Query: 179 ctctacat 186
||||||||
Sbjct: 184 ctctacat 191
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatct 188
||||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacatct 197
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||||||| |||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||| |||||||||||
Sbjct: 177 ttggattgaagggagctccacatctctctc 206
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacatctctctc 193
|||||||||||||||||| |||||||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatctctc 191
|||||||||||||||||||| ||||||||
Sbjct: 176 tttggattgaagggagctcttcatctctc 204
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatct 188
|||||||||||||||||||| |||||
Sbjct: 155 tttggattgaagggagctctgcatct 180
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctacatct 188
|||||||||||||||||||| |||||
Sbjct: 242 tttggattgaagggagctctgcatct 267
