miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 127 bits (64), Expect = 7e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 134 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 193
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 139 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggact 198
Query: 194 gaagggagctcccttt 209
||||||||||||||||
Sbjct: 199 gaagggagctcccttt 214
Score = 105 bits (53), Expect = 3e-22
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 11 aagagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactca 70
||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 71 ttcatccaaatgctgag 87
||||||||||| |||||
Sbjct: 69 ttcatccaaatactgag 85
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 119 bits (60), Expect = 2e-26
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 134 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 193
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 106 cagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggact 165
Query: 194 gaagggagctcccttt 209
||||||||||||||||
Sbjct: 166 gaagggagctcccttt 181
Score = 105 bits (53), Expect = 3e-22
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 11 aagagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactca 70
||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 67
Query: 71 ttcatccaaatgctgag 87
||||||||||| |||||
Sbjct: 68 ttcatccaaatactgag 84
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 109 bits (55), Expect = 2e-23
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 133 tcagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggac 192
||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 93 tcagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggac 152
Query: 193 tgaagggagctccct 207
|||||||||||||||
Sbjct: 153 tgaagggagctccct 167
Score = 85.7 bits (43), Expect = 2e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 12 agagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcat 71
|||||||||||||||||||| ||||||||| || || |||||||||| |||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 72 tcatccaaatgctga 86
|||||||||||||||
Sbjct: 70 tcatccaaatgctga 84
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 109 bits (55), Expect = 2e-23
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 134 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 193
|||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 99 cagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggact 158
Query: 194 gaagggagctccctt 208
|||||||||||||||
Sbjct: 159 gaagggagctccctt 173
Score = 97.6 bits (49), Expect = 6e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 gaagagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgact- 68
|||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 69 cattcatccaaat 81
|||||||||||||
Sbjct: 68 cattcatccaaat 80
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 107 bits (54), Expect = 6e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 141 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 200
||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct: 117 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaaggga 176
Query: 201 gctccctttt 210
||||||||||
Sbjct: 177 gctccctttt 186
Score = 67.9 bits (34), Expect = 6e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 11 aagagagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactc 69
|||||||||||||| |||||| |||||||| || || |||| ||||||||| | |||||
Sbjct: 9 aagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactc 68
Query: 70 attcatccaaatgctgag 87
||||||||||||| ||||
Sbjct: 69 attcatccaaatgttgag 86
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 93.7 bits (47), Expect = 1e-18
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 132 ctcagtaactgagtgaatgatgcgggag-acaagttggatcttaagcttcctgtacttgg 190
||||| |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 191 actgaagggagctcc 205
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 58.0 bits (29), Expect = 5e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 15 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 74
|||||||||| |||||| ||||||| | |||| ||||||| ||| ||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 75 tccaaatgctgag 87
|||||||| ||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 71.9 bits (36), Expect = 4e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 134 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 193
|||||| ||| ||| ||||||||||||||| || ||||||| |||||| | |||||||
Sbjct: 104 cagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggact 163
Query: 194 gaagggagctcccttt 209
||||||||||||||||
Sbjct: 164 gaagggagctcccttt 179
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 gattcaattagcttccgactcattcatccaaatgctgag 87
|||| |||||| | ||||||||||||||||||| |||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgag 85
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 49 gattcaattagcttccgactcattcatccaaat 81
|||||||||||||||||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 caattagcttccgactcattcatccaaat 81
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 caattagcttccgactcattcatccaaat 81
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 187 ttggactgaagggagctcccttt 209
|||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttt 185
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 caattagcttccgactcattcatccaaat 81
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 53 caattagcttccgactcattcatccaaatgctgag 87
|||||||||||||| |||||||||||||| |||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgag 85
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 181 ctgtacttggactgaagggagctccctttt 210
|||| |||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccctttt 190
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 186 cttggactgaagggagctcccttttt 211
||||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcccttttt 184
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 181 ctgtacttggactgaagggagctcccttt 209
|||| ||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctcccttt 175
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 181 ctgtacttggactgaagggagctcccttt 209
|||| ||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctcccttt 191
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 186 cttggactgaagggagctccctttt 210
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 181 ctgtacttggactgaagggagctccctt 208
|||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 186 cttggactgaagggagctccctt 208
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 186 cttggactgaagggagctccct 207
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 186 cttggactgaagggagctccct 207
||||||||||||||||||||||
Sbjct: 160 cttggactgaagggagctccct 181
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 186 cttggactgaagggagctccct 207
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
