miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 73.8 bits (37), Expect = 7e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaact 41
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
||||||||||||||||||||||||||| ||||||||||
Sbjct: 117 tcccgccttgcatcaactgaatcggagaccgcggtgaa 154
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 73.8 bits (37), Expect = 7e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaact 41
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
|||||||||||||||||||||||| || ||| ||||||
Sbjct: 118 tcccgccttgcatcaactgaatcgaagaccggggtgaa 155
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaat 153
||||||||||||||||||||||||||| |||||||||||
Sbjct: 83 tcccgccttgcatcaactgaatcggaggccgcggtgaat 121
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 gcggtctctaattcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
||||||||||||||||||||||||||| ||||||||||
Sbjct: 38 tcccgccttgcatcaactgaatcggagaccgcggtgaa 75
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
||||||||||||||||||||||||||| ||||||||||
Sbjct: 141 tcccgccttgcatcaactgaatcggaggccgcggtgaa 178
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
||||||||||| |||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
||||||||||| |||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaact 41
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 112 agctcccgccttgcatcaactgaatc 137
||||||||||||||||||||||||||
Sbjct: 85 agctcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 113 gctcccgccttgcatcaactgaatcggagccc 144
||||||||||||||||||||||||||||||||
Sbjct: 96 gctcccgccttgcatcaactgaatcggagccc 127
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 24 ggtctctaattcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtga 151
||||||||||||||||||||||||||| | |||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggagacggcggtga 145
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagccc 144
||||||||||||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactgaatcggagccc 128
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagccc 144
||||||||||||||||||||||||||||||
Sbjct: 100 tcccgccttgcatcaactgaatcggagccc 129
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 113 gctcccgccttgcatcaactgaatcggagc 142
||||||||||||||||||||||||||||||
Sbjct: 94 gctcccgccttgcatcaactgaatcggagc 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagccc 144
||||||||||||||||||||||||||||||
Sbjct: 97 tcccgccttgcatcaactgaatcggagccc 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcggtgaa 152
||||||||||||||||||||||||||| ||| ||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggaggccgaggtgaa 135
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||| |||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcc 143
|||||||||||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactgaatcggagcc 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaacta 57
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacta 42
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||| |||||||||||||||||||||||||
Sbjct: 5 cggcggtctcagattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 112 agctcccgccttgcatcaactgaatcggagcccgcggtgaa 152
|||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 85 agctcctgccttgcatcaactgaatcggagtccgaggtgaa 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 cggcggtctctaattcgcttggtgcaggtcgggaact 56
|||||||||| |||||||||||||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaact 41
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 112 agctcccgccttgcatcaactgaatcggagcccgcggtgaa 152
|||||||| |||| |||||||||||||||| ||| ||||||
Sbjct: 85 agctcccgtcttgtatcaactgaatcggagtccgaggtgaa 125
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccg 145
||||||||||||||||||||||| |||||||
Sbjct: 71 tcccgccttgcatcaactgaatccgagcccg 101
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaacta 57
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacta 42
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcgga 140
||||||||||||||||||||||||||
Sbjct: 99 tcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcgga 140
||||||||||||||||||||||||||
Sbjct: 103 tcccgccttgcatcaactgaatcgga 128
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 107 aatttagctcccgccttgcatcaactgaatcgga 140
||||||| |||||| |||||||||||||||||||
Sbjct: 84 aatttagttcccgctttgcatcaactgaatcgga 117
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaact 56
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 ctctaattcgcttggtgcaggtcgggaac 55
|||| ||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcgggaac 55
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggag 141
|||||||||||||||| ||||||||||
Sbjct: 97 tcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 119 gccttgcatcaactgaatcggagcccgcggtgaa 152
||||| ||||||||||||| ||||||| ||||||
Sbjct: 48 gccttccatcaactgaatccgagcccgaggtgaa 81
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 115 tcccgccttgcatcaactgaatcggagcccgcgg 148
|||||||||||| ||| |||||||||||| ||||
Sbjct: 64 tcccgccttgcaccaagtgaatcggagccggcgg 97
