miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 148 gatccttttttggattgaagggagctctacacc 180
||||||| |||||||||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctctacacc 186
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 149 atccttttttggattgaagggagctctacacc 180
|||||| |||||||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctctacacc 186
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 147 tgatccttttttggattgaagggagctctaca 178
||||| ||||||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctctaca 190
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 148 gatccttttttggattgaagggagctctaca 178
||||||| |||||||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 148 gatccttttttggattgaagggagctcta 176
||||| |||||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctcta 174
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 148 gatccttttttggattgaagggagctct 175
|||| |||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctct 165
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 ttggattgaagggagctctacacc 180
||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacc 182
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 156 tttggattgaagggagctctaca 178
|||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctaca 194
