miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00100;7SK;AC160411.8/123410-123103 10090:Mus musculus (house
mouse)
Length = 308
Score = 63.9 bits (32), Expect = 1e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1 ctggagagatggctcagaggttaagaacactggctgttcttcca 44
||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct: 253 ctggagagatggctcagtggttaagaacactgactgctcttcca 296
>RF00005;tRNA;AC154566.2/36961-37027 :
Length = 67
Score = 56.0 bits (28), Expect = 3e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 5 agagatggctcagaggttaagaacactggctgttcttcca 44
||||||||||||| |||||||| ||||||||| |||||||
Sbjct: 3 agagatggctcagcggttaagagcactggctgctcttcca 42
>RF00015;U4;AABR04001466.1/25624-25464 10116:Rattus norvegicus
(Norway rat)
Length = 161
Score = 56.0 bits (28), Expect = 3e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ctggagagatggctcagaggttaagaacactggctgttcttcca 44
||||||||||||||||| |||||||| ||||| ||| |||||||
Sbjct: 82 ctggagagatggctcagtggttaagagcactgactgctcttcca 125
>RF00005;tRNA;AABR04002631.1/44963-44894 :
Length = 70
Score = 52.0 bits (26), Expect = 5e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctgttct 40
|||||||||| |||| || |||||||||||||||||||
Sbjct: 1 ggagagatggttcagtgggtaagaacactggctgttct 38
>RF00005;tRNA;AAHY01107243.1/6262-6192 :
Length = 71
Score = 52.0 bits (26), Expect = 5e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctg 36
||||||||||||||| |||||||| |||||||||
Sbjct: 1 ggagagatggctcagtggttaagagcactggctg 34
>RF00005;tRNA;CAAA01123304.1/6479-6413 :
Length = 67
Score = 52.0 bits (26), Expect = 5e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctgttcttcca 44
|||||||| ||||||||||||||| |||||| || |||||||
Sbjct: 1 ggagagatagctcagaggttaagagcactggatgctcttcca 42
>RF00005;tRNA;AABR04062805.1/12294-12230 :
Length = 65
Score = 50.1 bits (25), Expect = 2e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 8 gatggctcagaggttaagaacactggctgttcttcca 44
||||| |||| |||||||||||||||||| |||||||
Sbjct: 1 gatggttcagtggttaagaacactggctgctcttcca 37
>RF00005;tRNA;AABR04065012.1/6558-6493 :
Length = 66
Score = 48.1 bits (24), Expect = 7e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 atggctcagaggttaagaacactggctgttcttcca 44
||||||||| |||||||| ||||| |||||||||||
Sbjct: 1 atggctcagcggttaagagcactgactgttcttcca 36
>RF00005;tRNA;AC160051.2/110174-110104 :
Length = 71
Score = 48.1 bits (24), Expect = 7e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 7 agatggctcagaggttaagaacactggctgttcttc 42
|||||||| || |||||||| |||||||||||||||
Sbjct: 3 agatggcttagtggttaagagcactggctgttcttc 38
>RF00005;tRNA;CAAA01000009.1/39193-39129 :
Length = 65
Score = 48.1 bits (24), Expect = 7e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 tggctcagaggttaagaacactggctgttctt 41
|||||||| |||||||| ||||||||||||||
Sbjct: 3 tggctcagcggttaagagcactggctgttctt 34
>RF00005;tRNA;AC111033.11/26664-26733 :
Length = 70
Score = 48.1 bits (24), Expect = 7e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 gagatggctcagaggttaagaacactgg 33
|||||||||||| |||||||||||||||
Sbjct: 4 gagatggctcagtggttaagaacactgg 31
>RF00005;tRNA;AAHX01004453.1/14278-14347 :
Length = 70
Score = 46.1 bits (23), Expect = 3e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 taagaacactggctgttcttcca 44
|||||||||||||||||||||||
Sbjct: 20 taagaacactggctgttcttcca 42
>RF00005;tRNA;AAHX01072941.1/6810-6743 :
Length = 68
Score = 44.1 bits (22), Expect = 1e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 agatggctcagaggttaagaacactggctgttcttcca 44
||||||||||| |||||||| || || |||||||||||
Sbjct: 1 agatggctcagtggttaagagcattgactgttcttcca 38
>RF00005;tRNA;AAHX01020796.1/12734-12668 :
Length = 67
Score = 44.1 bits (22), Expect = 1e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 agatggctcagaggttaagaacactggctgttcttcca 44
||||||||||| |||||||| |||||||| |||||||
Sbjct: 1 agatggctcagtggttaagagcactggctactcttcca 38
>RF00005;tRNA;AAHX01077052.1/11963-12029 :
Length = 67
Score = 44.1 bits (22), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctgttcttcca 44
||||||||||||||| | |||||| ||||| ||| |||||||
Sbjct: 1 ggagagatggctcagcgattaagagcactgactgctcttcca 42
>RF00005;tRNA;AABR04003731.1/2218-2146 :
Length = 73
Score = 44.1 bits (22), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctg 36
||||||||||||||| ||||||| |||||||||
Sbjct: 1 ggagagatggctcagcagttaagagcactggctg 34
>RF00005;tRNA;AAHY01012534.1/7486-7416 :
Length = 71
Score = 44.1 bits (22), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctgttcttcca 44
||||||| |||||| ||||||||||||||| || |||||||
Sbjct: 1 ggagagacagctcagtggttaagaacactggatgatcttcca 42
>RF00005;tRNA;AAHY01098092.1/717-789 :
Length = 73
Score = 44.1 bits (22), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 atggctcagaggttaagaacactggctgttcttc 42
|||||||||||| ||||| ||||||||| |||||
Sbjct: 7 atggctcagaggctaagagcactggctgctcttc 40
>RF00005;tRNA;CU424437.12/31929-31863 :
Length = 67
Score = 44.1 bits (22), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3 ggagagatggctcagaggttaagaacactggctgttcttcca 44
|||||||||||| || |||||||| ||||| ||| |||||||
Sbjct: 1 ggagagatggcttagtggttaagagcactgactgctcttcca 42
>RF00005;tRNA;AC094784.13/2484-2551 :
Length = 68
Score = 42.1 bits (21), Expect = 4e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 7 agatggctcagaggttaagaacactggct 35
||||||||||| |||||||| ||||||||
Sbjct: 5 agatggctcagcggttaagagcactggct 33
>RF00005;tRNA;AAHX01082141.1/280-344 :
Length = 65
Score = 42.1 bits (21), Expect = 4e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 8 gatggctcagaggttaagaacactggctgttcttcca 44
||||||||||||||| ||| ||||| ||| |||||||
Sbjct: 1 gatggctcagaggtttagagcactgactgctcttcca 37
