miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q1LUD1|T168A_DANRE Transmembrane protein 168-A OS=Danio rerio
GN=tmem168a PE=3 SV=1
Length = 681
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 56 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVTDEPM 172
K VD+ + + CLGYLSS +LLVAVC+GMYVRWE T EPM
Sbjct: 9 KSVDMWSFLRCLGYLSSFNLLVAVCLGMYVRWEQTSEPM 47
>sp|Q7ZY86|TM168_XENLA Transmembrane protein 168 OS=Xenopus laevis
GN=tmem168 PE=2 SV=1
Length = 700
Score = 49.7 bits (117), Expect = 6e-06
Identities = 20/39 (51%), Positives = 33/39 (84%)
Frame = +2
Query: 50 APKDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVTDE 166
A ++V++ +S+ LGYL+ +SLLVA+C+G+YVRW+ TD+
Sbjct: 23 ANREVNMYSSVRYLGYLAQLSLLVAICMGLYVRWDQTDD 61
>sp|Q5RD28|TM168_PONAB Transmembrane protein 168 OS=Pongo abelii
GN=TMEM168 PE=2 SV=1
Length = 697
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 56 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVT 160
++V++ +S+ LGYL+ I+LLVA+C+G+YVRWE T
Sbjct: 25 REVNMHSSVRYLGYLARINLLVAICLGLYVRWEKT 59
>sp|Q91VX9|TM168_MOUSE Transmembrane protein 168 OS=Mus musculus
GN=Tmem168 PE=2 SV=1
Length = 697
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 56 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVT 160
++V++ +S+ LGYL+ I+LLVA+C+G+YVRWE T
Sbjct: 25 REVNMHSSVRYLGYLARINLLVAICLGLYVRWEKT 59
>sp|Q9H0V1|TM168_HUMAN Transmembrane protein 168 OS=Homo sapiens
GN=TMEM168 PE=1 SV=2
Length = 697
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 56 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVT 160
++V++ +S+ LGYL+ I+LLVA+C+G+YVRWE T
Sbjct: 25 REVNMHSSVRYLGYLARINLLVAICLGLYVRWEKT 59
>sp|A0JNG0|TM168_BOVIN Transmembrane protein 168 OS=Bos taurus
GN=TMEM168 PE=2 SV=1
Length = 697
Score = 45.4 bits (106), Expect = 1e-04
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 56 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVT 160
++V++ +S+ LGYL+ I+LLVA+C+G+YVRWE T
Sbjct: 25 REVNMHSSVRYLGYLARINLLVAICLGLYVRWEKT 59
>sp|Q5PQM0|TM168_RAT Transmembrane protein 168 OS=Rattus norvegicus
GN=Tmem168 PE=1 SV=1
Length = 697
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +2
Query: 56 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVT 160
++V++ +S+ LGYL+ +LLVA+C+G+YVRWE T
Sbjct: 25 REVNMHSSVRYLGYLARFNLLVAICLGLYVRWEKT 59
