miRNEST 2.0, an integrative microRNA resource :: BLAST
>48560_gma-miR168:pmrd
Length = 125
Score = 77.8 bits (39), Expect = 2e-15
Identities = 94/109 (86%), Gaps = 5/109 (4%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcgggcaccaatcttcccgcgcgtaatggatg--ccgt 58
||||||||||||||||||||||||||| ||| | ||| ||||| |||||| | | ||
Sbjct: 11 tctctaattcgcttggtgcaggtcgggaaccggttttc--gcgcggaatggaggagcggt 68
Query: 59 tggcggcggcgaatttggatcccgccttgcatcaactgaatcggaggcc 107
| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 69 cgccggcgccgaatt-ggatcccgccttgcatcaactgaatcggaggcc 116
>51650_ptc-miR168a:pmrd
Length = 160
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggagg 105
|||||||||||||||||||||||||||||||||
Sbjct: 128 ttggatcccgccttgcatcaactgaatcggagg 160
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
||||| |||||||||||||||||||||
Sbjct: 3 tctctgattcgcttggtgcaggtcggg 29
>51651_ptc-miR168b:pmrd
Length = 136
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 104 ttggatcccgccttgcatcaactgaatcggag 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
|||||||||||||||||||||||||||
Sbjct: 3 tctctaattcgcttggtgcaggtcggg 29
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcgga 103
|||||||||||||||||||||||||||||||
Sbjct: 92 ttggatcccgccttgcatcaactgaatcgga 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcgggcaccaat 34
||||||||||||||||||||| ||||||
Sbjct: 11 attcgcttggtgcaggtcgggaaccaat 38
>46957_ath-miR168a:pmrd
Length = 138
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcgga 103
|||||||||||||||||||||||||||||||
Sbjct: 97 ttggatcccgccttgcatcaactgaatcgga 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcgggcaccaat 34
||||||||||||||||||||| ||||||
Sbjct: 16 attcgcttggtgcaggtcgggaaccaat 43
>54802_vvi-miR168:pmrd
Length = 132
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 67 gcgaatttggatcccgccttgcatcaactgaatcggag 104
||||||| |||||||||||||||||||||||||||||
Sbjct: 90 gcgaattccgatcccgccttgcatcaactgaatcggag 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
|||||||||||||||||||||||||||
Sbjct: 3 tctctaattcgcttggtgcaggtcggg 29
>54388_rco-miR168:pmrd
Length = 156
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcg 101
|||||||||||||||||||||||||||||
Sbjct: 113 ttggatcccgccttgcatcaactgaatcg 141
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
|||||||||||||||||||||||||||
Sbjct: 11 tctctaattcgcttggtgcaggtcggg 37
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>54375_pts-miR168b:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactga 97
|||||||||||||||||||||||||
Sbjct: 116 ttggatcccgccttgcatcaactga 140
>54374_pts-miR168a:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactga 97
|||||||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactga 97
|||||||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
>46959_ath-miR168m:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactga 97
|||||||||||||||||||||||||
Sbjct: 80 ttggatcccgccttgcatcaactga 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tcgcttggtgcaggtcgggcaccaat 34
||||||||||||||||||| ||||||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaat 26
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54665_stu-miR168:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tttggatcccgccttgcatcaactga 97
||||| ||||||||||||||||||||
Sbjct: 108 tttgggtcccgccttgcatcaactga 133
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>46958_ath-miR168b:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcggg 27
|||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggg 37
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 70 aatttggatcccgccttgcatcaactga 97
||||||| ||| ||||||||||||||||
Sbjct: 118 aatttgggtcctgccttgcatcaactga 145
