miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggaggcc 107
|||||||||||||||||||||||||||||||||||
Sbjct: 136 ttggatcccgccttgcatcaactgaatcggaggcc 170
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
||||| |||||||||||||||||||||
Sbjct: 11 tctctgattcgcttggtgcaggtcggg 37
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggaggcc 107
|||||||||||||||||||||||||||||||||||
Sbjct: 78 ttggatcccgccttgcatcaactgaatcggaggcc 112
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcgggcacca 32
||||||||||||||||||||||||||| ||||
Sbjct: 11 tctctaattcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggaggcc 107
|||||||||||||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggcc 127
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 33 ttggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactgaatcggag 125
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactgaatcggag 125
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 95 ttggatcccgccttgcatcaactgaatcggag 126
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcgggcaccaa 33
||||||||||||||||||||| |||||
Sbjct: 17 attcgcttggtgcaggtcgggaaccaa 43
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 92 ttggatcccgccttgcatcaactgaatcggag 123
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcgggcaccaat 34
||||||||||||||||||||| ||||||
Sbjct: 17 attcgcttggtgcaggtcgggaaccaat 44
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||||||||||||||
Sbjct: 112 ttggatcccgccttgcatcaactgaatcggag 143
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
|||||||||||||||||||||||||||
Sbjct: 11 tctctaattcgcttggtgcaggtcggg 37
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcgga 103
|||||||||||||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcgga 103
|||||||||||||||||||||||||||||||
Sbjct: 98 ttggatcccgccttgcatcaactgaatcgga 128
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcgggcaccaat 34
||||||||||||||||||||| ||||||
Sbjct: 17 attcgcttggtgcaggtcgggaaccaat 44
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 67 gcgaatttggatcccgccttgcatcaactgaatcggag 104
||||||| |||||||||||||||||||||||||||||
Sbjct: 98 gcgaattccgatcccgccttgcatcaactgaatcggag 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
|||||||||||||||||||||||||||
Sbjct: 11 tctctaattcgcttggtgcaggtcggg 37
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcg 101
|||||||||||||||||||||||||||||
Sbjct: 113 ttggatcccgccttgcatcaactgaatcg 141
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
|||||||||||||||||||||||||||
Sbjct: 11 tctctaattcgcttggtgcaggtcggg 37
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
|||| |||||||||||||||||||||||||||
Sbjct: 91 ttggctcccgccttgcatcaactgaatcggag 122
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggag 104
||||||||||||||||||||| ||||||||||
Sbjct: 92 ttggatcccgccttgcatcaaatgaatcggag 123
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 attcgcttggtgcaggtcgggcaccaat 34
||||||||||||||||||||| ||||||
Sbjct: 17 attcgcttggtgcaggtcgggaaccaat 44
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 tcccgccttgcatcaactgaatcggag 104
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 gatcccgccttgcatcaactgaatc 100
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tctctaattcgcttggtgcaggtcggg 27
||||| |||||||||||||||||||||
Sbjct: 11 tctctgattcgcttggtgcaggtcggg 37
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tcccgccttgcatcaactgaatc 100
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gccttgcatcaactgaatcggag 104
|||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggag 114
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 ctctaattcgcttggtgcaggtcgggcacca 32
|||| ||||||||||||||||||||| ||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacca 42
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 ttggatcccgccttgcatcaactgaatcggaggc 106
|||||||| |||||||||||| |||||||||||
Sbjct: 69 ttggatcctgccttgcatcaatcgaatcggaggc 102
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tcccgccttgcatcaactgaatcgga 103
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 ggatcccgccttgcatcaactgaatcggag 104
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
