miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9SV09|C3H46_ARATH Zinc finger CCCH domain-containing protein 46
OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1
Length = 540
Score = 73.6 bits (179), Expect = 5e-13
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +3
Query: 249 MDSYEATRIVFTKLQTLDPQNASKIMGLLLIQDHGENEMIRMATAATALM 398
MD YEATRIV +++Q+LDP+NASKIMGLLL+QDHGE EMIR+A L+
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLV 50
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23
OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2
SV=1
Length = 677
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 249 MDSYEATRIVFTKLQTLDPQNASKIMGLLLIQDHGENEMIRMATAATALM 398
MD+YEAT++VF+++Q LDP +A+KIMGLLLIQDHG+ EMIR+A AL+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALL 50
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22
OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2
SV=2
Length = 688
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 249 MDSYEATRIVFTKLQTLDPQNASKIMGLLLIQDHGENEMIRMATAATALM 398
MD+YEAT++VF+++Q LDP +A+KIMGLLLIQDHG+ EMIR+A AL+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALL 50
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53
OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2
SV=1
Length = 682
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +3
Query: 249 MDSYEATRIVFTKLQTLDPQNASKIMGLLLIQDHGENEMIRMATAATALM 398
MD+YEAT++VF+++Q LDP +A+KIMG LLIQDHGE EMIR+A AL+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALL 50
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 303 PQNASKIMGLLLIQDHGENEMIRMATAATALMMGEEMNNF---GRLRNDFLMGMVNPGSR 473
P A+K + LLL Q +NE R A AA ++ G+E + F RL M+NPGSR
Sbjct: 302 PSAATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLERADFASMMNPGSR 361
Query: 474 QI 479
QI
Sbjct: 362 QI 363
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55
OS=Arabidopsis thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 44.7 bits (104), Expect = 3e-04
Identities = 18/50 (36%), Positives = 35/50 (70%)
Frame = +3
Query: 249 MDSYEATRIVFTKLQTLDPQNASKIMGLLLIQDHGENEMIRMATAATALM 398
MDS +AT ++ TK+++L+P A KI+G LL+ D G+ +++ +A +++
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESIL 50
>sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18
OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1
Length = 536
Score = 43.9 bits (102), Expect = 5e-04
Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +3
Query: 249 MDSYEATRIVFTKLQTLDPQNASKIMG-LLLIQDHGENEMIRMATAATALM 398
M+ E+ +V ++Q L+P+NA+KI G LLL+Q++G +MIR+A ++M
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVM 51
