miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46234_miR403:micropc
Length = 125
Score = 248 bits (125), Expect = 1e-66
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
Query: 131 actcg 135
|||||
Sbjct: 121 actcg 125
>46200_miR403:micropc
Length = 125
Score = 248 bits (125), Expect = 1e-66
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
Query: 131 actcg 135
|||||
Sbjct: 121 actcg 125
>45766_miR403:micropc
Length = 125
Score = 248 bits (125), Expect = 1e-66
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
Query: 131 actcg 135
|||||
Sbjct: 121 actcg 125
>45615_miR403:micropc
Length = 125
Score = 248 bits (125), Expect = 1e-66
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 60
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 120
Query: 131 actcg 135
|||||
Sbjct: 121 actcg 125
>46843_miR403:micropc
Length = 117
Score = 165 bits (83), Expect = 1e-41
Identities = 115/125 (92%), Gaps = 8/125 (6%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcacc----agtaatcata 56
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
|||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 57 ctttttgtttgtc----tgttgccagtcaggatctgttggttcgttagattcacgcacaa 112
Query: 131 actcg 135
|||||
Sbjct: 113 actcg 117
>45948_miR403:micropc
Length = 117
Score = 165 bits (83), Expect = 1e-41
Identities = 115/125 (92%), Gaps = 8/125 (6%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcaaatcaccagtaa----tcata 56
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 ctttttgtttgt----ttgttgccagacaggatctgttggttcgttagattcacgcacaa 112
Query: 131 actcg 135
|||||
Sbjct: 113 actcg 117
>46397_miR403:micropc
Length = 117
Score = 157 bits (79), Expect = 3e-39
Identities = 114/125 (91%), Gaps = 8/125 (6%)
Strand = Plus / Plus
Query: 11 cgtgtttgtgcgtgaatctaaggatccttaatcttatcacatcaccagtaagtaatcata 70
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1 cgtgtttgtgcgtgaatctaaggatccttaatcttatcaaatcaccagtaa----tcata 56
Query: 71 ctttttctttgtctgtttgttgccagacaggatctgttggttcgttagattcacgcacaa 130
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 57 ctttttgtttgtttgttt----ccagacaggatctgttggttcgttagattcacgcacaa 112
Query: 131 actcg 135
|||||
Sbjct: 113 actcg 117
>45432_miR403:micropc
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gttagattcacgcacaaactcg 135
||||||||||||||||||||||
Sbjct: 88 gttagattcacgcacaaactcg 109
>45272_miR403:micropc
Length = 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 tagattcacgcacaaactcg 135
||||||||||||||||||||
Sbjct: 54 tagattcacgcacaaactcg 73
