miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25792_xtr-mir-143:mirbase
Length = 83
Score = 97.6 bits (49), Expect = 1e-21
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18 tgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 74
>31500_oan-mir-143:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 20 tgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 76
>27391_mdo-mir-143:mirbase
Length = 63
Score = 95.6 bits (48), Expect = 5e-21
Identities = 55/56 (98%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggg 78
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8 tgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggg 63
>33229_bta-mir-143:mirbase
Length = 101
Score = 89.7 bits (45), Expect = 3e-19
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcggga 80
>26717_cfa-mir-143:mirbase
Length = 55
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 3 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 55
>27043_eca-mir-143:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 9 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 61
>27577_lla-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>27748_mml-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>28309_ggo-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>28463_hsa-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>30098_ppa-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>30235_ptr-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>30847_ppy-mir-143:mirbase
Length = 106
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>31876_mmu-mir-143:mirbase
Length = 63
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 60
>32749_rno-mir-143:mirbase
Length = 105
Score = 81.8 bits (41), Expect = 8e-17
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 28 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 80
>33993_ssc-mir-143:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 8e-17
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 17 tgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
>33994_ssc-mir-143:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 8e-17
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 17 tgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
>34314_dre-mir-143-1:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
|||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 25 tgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
>34315_dre-mir-143-2:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
|||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 25 tgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
>25494_pma-mir-143:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 agtctgagatgaagcactgta 71
|||||||||||||||||||||
Sbjct: 40 agtctgagatgaagcactgta 60
