miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00683;mir-143;AANH01007327.1/1417-1521 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 10 cctgtgacccatgatgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcact 68
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15 cctgtggcccatggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcact 74
Query: 69 gtagctcgggac 80
||||||||||||
Sbjct: 75 gtagctcgggac 86
>RF00683;mir-143;CAAB01002152.1/24278-24172 31033:Takifugu
rubripes
Length = 107
Score = 109 bits (55), Expect = 6e-24
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 ttcctgtgacccatgatgcagtgctgcatctctggtcagttg-tagtctgagatgaagca 66
|||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 13 ttcctgtggcccacggtgcagtgctgcatctctggtcagttggtagtctgagatgaagca 72
Query: 67 ctgtagctcgggaca 81
|||||||||||||||
Sbjct: 73 ctgtagctcgggaca 87
>RF00683;mir-143;ABPL01011624.1/1446-1341 27751:Melanochromis
auratus
Length = 106
Score = 105 bits (53), Expect = 1e-22
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 17 cccatgatgcagtgctgcatctctggtcagttg-tagtctgagatgaagcactgtagctc 75
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 22 cccatggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctc 81
Query: 76 gggac 80
|||||
Sbjct: 82 gggac 86
>RF00683;mir-143;BAAE01019938.1/1252-1147 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 105 bits (53), Expect = 1e-22
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 17 cccatgatgcagtgctgcatctctggtcagttg-tagtctgagatgaagcactgtagctc 75
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 22 cccatggtgcagtgctgcatctctggtcagttgatagtctgagatgaagcactgtagctc 81
Query: 76 gggac 80
|||||
Sbjct: 82 gggac 86
>RF00683;mir-143;AAPN01425211.1/1518-1413 9258:Ornithorhynchus
anatinus (platypus)
Length = 106
Score = 97.6 bits (49), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAFR03012464.1/24867-24972 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 97.6 bits (49), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAWZ01000591.1/16242-16347 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 97.6 bits (49), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAGW01160071.1/967-862 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 89.7 bits (45), Expect = 6e-18
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAIY01705731.1/1779-1674 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 89.7 bits (45), Expect = 6e-18
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAPE01221912.1/1898-1793 59463:Myotis lucifugus
(little brown bat)
Length = 106
Score = 81.8 bits (41), Expect = 1e-15
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AC148011.3/33883-33988 10090:Mus musculus (house
mouse)
Length = 106
Score = 81.8 bits (41), Expect = 1e-15
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagtt-gtagtctgagatgaagcactgtagctc 75
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AAVX01064725.1/2024-2127 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 81.8 bits (41), Expect = 1e-15
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctc 75
|||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggttagttgtgagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;AALT01067568.1/1202-1307 42254:Sorex araneus
(European shrew)
Length = 106
Score = 73.8 bits (37), Expect = 3e-13
Identities = 50/53 (94%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctc 75
||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctc 81
>RF00683;mir-143;CU234179.11/36731-36626 7955:Danio rerio
(zebrafish)
Length = 106
Score = 73.8 bits (37), Expect = 3e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 24 tgcagtgctgcatctctggtcagttgt-agtctgagatgaagcactgtagctcggga 79
|||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 29 tgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 85
