miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 188 bits (95), Expect = 9e-48
Identities = 101/103 (98%)
Strand = Plus / Plus
Query: 1 tactgatgtacagtgttgtcacccataaagtagaaagcactactaaacttcactacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2 tactgatgtacagtgttgtcacccataaagtagaaagcactactaaacttcactatacag 61
Query: 61 tgtagtgtttcctactttatggatgagtatactgttggctgca 103
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 62 tgtagtgtttcctactttatggatgagtacactgttggctgca 104
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio (zebrafish)
Length = 107
Score = 135 bits (68), Expect = 1e-31
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 8 gtacagtgttgtcacccataaagtagaaagcactactaaacttcactacacagtgtagtg 67
|||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 9 gtacagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtg 68
Query: 68 tttcctactttatggatgagtatactgttggc 99
||||||||||||||||||||| ||||||||||
Sbjct: 69 tttcctactttatggatgagtgtactgttggc 100
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 111 bits (56), Expect = 2e-24
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 5 gatgtacagtgttgtcacccataaagtagaaagcactactaaacttcactacacagtgta 64
||||||||||| |||| ||||||||||||||||||||||||||| | || ||||||
Sbjct: 6 gatgtacagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgta 65
Query: 65 gtgtttcctactttatggatgagtatactgttggct 100
|||||||||||||||||||||||| |||||||||||
Sbjct: 66 gtgtttcctactttatggatgagtgtactgttggct 101
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 109 bits (55), Expect = 7e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 18 gtcacccataaagtagaaagcactactaaacttcactacacagtgtagtgtttcctactt 77
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactt 78
Query: 78 tatggatgagtatactgttggct 100
||||||||||| |||||| ||||
Sbjct: 79 tatggatgagtgtactgtgggct 101
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 85.7 bits (43), Expect = 1e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 18 gtcacccataaagtagaaagcactactaaacttcactacacagtgtagtgtttcctactt 77
||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactt 77
Query: 78 tatggatgagtatactgttggct 100
||||||||||| |||||| ||||
Sbjct: 78 tatggatgagtgtactgtgggct 100
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 75.8 bits (38), Expect = 1e-13
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 23 ccataaagtagaaagcactactaaacttcactacaca-gtgtagtgtttcctactttatg 81
|||||||||||||||||||||||||| | | | || ||||||||||||||||||||||
Sbjct: 24 ccataaagtagaaagcactactaaacgcctgtgcccaagtgtagtgtttcctactttatg 83
Query: 82 gatgagtatactgt 95
||||||| ||||||
Sbjct: 84 gatgagtgtactgt 97
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 73.8 bits (37), Expect = 4e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 18 gtcacccataaagtagaaagcactactaaacttcactacacagtgtagtgtttcctactt 77
||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcctactt 77
Query: 78 tatggatga 86
|||||||||
Sbjct: 78 tatggatga 86
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 18 gtcacccataaagtagaaagcactactaaacttcactacacagtgtagtgtttcctactt 77
|||| |||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 19 gtcatccataaagtagaaagcactactaaccatcc--aatcagtgtagtgtttcctactt 76
Query: 78 tatggatgagt 88
|||||| ||||
Sbjct: 77 tatggacgagt 87
