miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46312_miR398:micropc
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 8 ggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcccc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcccc 60
>45930_miR398:micropc
Length = 63
Score = 91.7 bits (46), Expect = 7e-20
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 caggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcc 65
||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 caggtgtgacatgagaacacatgatatacttagata-ttttcacgtgttctcaggtcgcc 59
Query: 66 cc 67
||
Sbjct: 60 cc 61
>44941_miR398:micropc
Length = 61
Score = 89.7 bits (45), Expect = 3e-19
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 7 aggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgccc 66
|||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 aggtgtgacatgagaacacatgatatacttagata-ttttcacgtgttctcaggtcgccc 59
Query: 67 c 67
|
Sbjct: 60 c 60
>46367_miR398:micropc
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 cacgtgttctcaggtcgcccc 67
|||||||||||||||||||||
Sbjct: 51 cacgtgttctcaggtcgcccc 71
>45384_miR398:micropc
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 cacgtgttctcaggtcgcccc 67
|||||||||||||||||||||
Sbjct: 62 cacgtgttctcaggtcgcccc 82
>45163_miR398:micropc
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 cacgtgttctcaggtcgcccc 67
|||||||||||||||||||||
Sbjct: 50 cacgtgttctcaggtcgcccc 70
>45087_miR398:micropc
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 cacgtgttctcaggtcgcccc 67
|||||||||||||||||||||
Sbjct: 62 cacgtgttctcaggtcgcccc 82
>46686_miR398:micropc
Length = 96
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 ttcacgtgttctcaggtcgcccc 67
|||| ||||||||||||||||||
Sbjct: 73 ttcatgtgttctcaggtcgcccc 95
>45294_miR398:micropc
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 ttcacgtgttctcaggtcgcccc 67
|||| ||||||||||||||||||
Sbjct: 74 ttcatgtgttctcaggtcgcccc 96
