miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34617_fru-mir-187:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 8 ttggctgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgt 67
||||| ||||||||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct: 9 ttggccgggccaggggctgcaacacaggacatgggtcatgcctctgcccaccgctcgtgt 68
Query: 68 cttgtgttgcagccagtggagctg 91
||||||||||||||||||||||||
Sbjct: 69 cttgtgttgcagccagtggagctg 92
>34337_dre-mir-187:mirbase
Length = 89
Score = 101 bits (51), Expect = 9e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 9 tggctgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtc 68
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 8 tggctgggccaggggctgcaacacaggacatgggagctgtctctcactcccgctcgtgtc 67
Query: 69 ttgtgttgcagccagtgga 87
|||||||||||||||||||
Sbjct: 68 ttgtgttgcagccagtgga 86
>34764_tni-mir-187:mirbase
Length = 65
Score = 89.7 bits (45), Expect = 4e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 22 ggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtcttgtgttgcagcc 81
||||||||||||||||||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 1 ggctgcaacacaggacatgggtcttgcctctgcccgccgctcgtgtcttgtgttgcagcc 60
Query: 82 agtgg 86
|||||
Sbjct: 61 agtgg 65
>25810_xtr-mir-187:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccagtgg 86
||||||||||||||||||||||||||
Sbjct: 49 ctcgtgtcttgtgttgcagccagtgg 74
>31517_oan-mir-187:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccagtggagc 89
||||||||||||||||||||||| |||||
Sbjct: 48 ctcgtgtcttgtgttgcagccagaggagc 76
>25980_gga-mir-187:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccag 83
|||||||||||||||||||||||
Sbjct: 55 ctcgtgtcttgtgttgcagccag 77
>26488_tgu-mir-187:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccag 83
|||||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagccag 62
>27410_mdo-mir-187:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccag 83
|||||||||||||||||||||||
Sbjct: 50 ctcgtgtcttgtgttgcagccag 72
>26742_cfa-mir-187:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagcc 60
>27067_eca-mir-187:mirbase
Length = 61
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 39 ctcgtgtcttgtgttgcagcc 59
>27778_mml-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>28226_mne-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>28319_ggo-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>28494_hsa-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>30108_ppa-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>30876_ppy-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>31903_mmu-mir-187:mirbase
Length = 61
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 39 ctcgtgtcttgtgttgcagcc 59
>32773_rno-mir-187:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagcc 85
>33255_bta-mir-187:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>34017_ssc-mir-187:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagcc 81
|||||||||||||||||||||
Sbjct: 46 ctcgtgtcttgtgttgcagcc 66
