miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 87.7 bits (44), Expect = 2e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 ttgaccgatttctttcggtgttcagagtctgtttttgtttctagcaccatttgaaatcgg 77
||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 1 ttgaccgatttcttttggtgttcagagtccgttct-gtttctagcaccatttgaaatcgg 59
Query: 78 ttac 81
||||
Sbjct: 60 ttac 63
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 19 tgaccgatttctttcggtgttcagagtctgtttttgtttctagcaccatttgaaatcggt 78
|||||||||||| | |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 2 tgaccgatttctcttggtgttcagagtctcagtttctgtctagcaccatttgaaatcggt 61
Query: 79 ta 80
||
Sbjct: 62 ta 63
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 19 tgaccgatttctttcggtgttcagagtctgtttttgtttctagcaccatttgaaatcggt 78
|||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2 tgactgatttcttttggtgttcagagtcttggtcgatttctagcaccatttgaaatcggt 61
Query: 79 tac 81
|||
Sbjct: 62 tac 64
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 19 tgaccgatttctttcggtgttcagagtctgtttttgtttctagcaccatttgaaatcggt 78
|||| |||||||| ||||||| |||||| || | ||||||||||||||||||||||||
Sbjct: 2 tgactgatttcttctggtgttcggagtctagttctctttctagcaccatttgaaatcggt 61
Query: 79 ta 80
||
Sbjct: 62 ta 63
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 19 tgaccgatttctttcggtgttcagagtctgtttttgtttctagcaccatttgaaatcggt 78
|||| ||||||||| ||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 2 tgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcggt 61
Query: 79 ta 80
||
Sbjct: 62 ta 63
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 tttctagcaccatttgaaatcggttac 81
|||||||||||||||||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggttac 63
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 tttctagcaccatttgaaatcggttac 81
|||||||||||||||||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggttac 63
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttctagcaccatttgaaatcggtta 80
|||||||||||||||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggtta 64
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttctagcaccatttgaaatcggtta 80
|||||||||||||||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggtta 64
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 tctagcaccatttgaaatcggttac 81
|||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggttac 63
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttctagcaccatttgaaatcggtt 79
|||||||||||||||||||||||||
Sbjct: 38 tttctagcaccatttgaaatcggtt 62
>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
(zebrafish)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttctagcaccatttgaaatcggt 78
||||||||||||||||||||||||
Sbjct: 41 tttctagcaccatttgaaatcggt 64
>RF00074;mir-29;BX323868.6/63999-64062 7955:Danio rerio
(zebrafish)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tctagcaccatttgaaatcggtta 80
||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggtta 63
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tctagcaccatttgaaatcggtta 80
||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggtta 63
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tctagcaccatttgaaatcggt 78
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tctagcaccatttgaaatcggt 78
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tctagcaccatttgaaatcggt 78
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
