miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AACZ02050168.1/4927-4631 9598:Pan troglodytes
(chimpanzee)
Length = 297
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||||||||||||||||||| ||||||| ||||
Sbjct: 260 cattccatcctgggcgacagagtgagactctatctc 295
>RF00017;Metazoa_SRP;AL117344.12/53999-53717 9606:Homo sapiens
(human)
Length = 283
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| |||||||||||||| |||||||||||||
Sbjct: 246 cattccagcctgggcgacagagcaagactctgtctc 281
>RF00017;Metazoa_SRP;AACZ02094252.1/1604-1885 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactctgtctc 36
|||| ||||||||||||||| ||||||||||||
Sbjct: 248 tccaacctgggcgacagagtgagactctgtctc 280
>RF00017;Metazoa_SRP;AACZ02130640.1/1563-1266 9598:Pan troglodytes
(chimpanzee)
Length = 298
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactctgtctc 36
|||| |||||||||||||| |||||||||||||
Sbjct: 247 tccagcctgggcgacagagcaagactctgtctc 279
>RF00017;Metazoa_SRP;AACZ02048701.1/9629-9344 9598:Pan troglodytes
(chimpanzee)
Length = 286
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactctgtctc 36
|||| ||||||||||||||| ||||||||||||
Sbjct: 252 tccagcctgggcgacagagtgagactctgtctc 284
>RF00017;Metazoa_SRP;AADA01008014.1/760-478 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactctgtctc 36
|||| |||||| |||||||||||||||||||||
Sbjct: 249 tccagcctgggtgacagagtaagactctgtctc 281
>RF00017;Metazoa_SRP;AADB02008084.1/44190-43904 9606:Homo sapiens
(human)
Length = 287
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactctgtctc 36
|||| |||||||||||||| |||||||||||||
Sbjct: 253 tccagcctgggcgacagagcaagactctgtctc 285
>RF00017;Metazoa_SRP;AADC01009840.1/7346-7628 9606:Homo sapiens
(human)
Length = 283
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactctgtctc 36
|||| |||||||||||||| |||||||||||||
Sbjct: 249 tccagcctgggcgacagagcaagactctgtctc 281
>RF00017;Metazoa_SRP;ABGA01095204.1/17559-17841 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| |||||| ||||||| |||||||||||||
Sbjct: 246 cattccagcctgggtgacagagcaagactctgtctc 281
>RF00017;Metazoa_SRP;ABGA01295388.1/2260-2541 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| |||||||||||||| ||||||| |||||
Sbjct: 245 cattccagcctgggcgacagagcaagactccgtctc 280
>RF00017;Metazoa_SRP;AADA01037501.1/11371-11084 9598:Pan troglodytes
(chimpanzee)
Length = 288
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 cctgggcgacagagtaagactctgtctc 36
||||||||||||||| ||||||||||||
Sbjct: 259 cctgggcgacagagtgagactctgtctc 286
>RF00017;Metazoa_SRP;AADA01339504.1/248-529 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| |||||||||||||| ||||||| |||||
Sbjct: 245 cattccagcctgggcgacagagcaagactccgtctc 280
>RF00017;Metazoa_SRP;AACZ02147783.1/20859-20578 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| ||||||| |||||| |||||||||||||
Sbjct: 245 cattccagcctgggcaacagagcaagactctgtctc 280
>RF00017;Metazoa_SRP;AC112485.4/61003-60717 9606:Homo sapiens
(human)
Length = 287
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| ||||||||||||||| |||| |||||||
Sbjct: 250 cattccagcctgggcgacagagtgagaccctgtctc 285
>RF00017;Metazoa_SRP;CABD01052359.1/621-902 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 282
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactctgtctc 36
||||||| ||||||| |||||| |||||||||||||
Sbjct: 245 cattccagcctgggcaacagagcaagactctgtctc 280
>RF00017;Metazoa_SRP;AADA01211514.1/10384-10669 9598:Pan troglodytes
(chimpanzee)
Length = 286
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ctgggcgacagagtaagactctgtctc 36
|||||||||||||| ||||||||||||
Sbjct: 120 ctgggcgacagagtgagactctgtctc 146
>RF00017;Metazoa_SRP;ABBA01058676.1/46559-46844 9606:Homo sapiens
(human)
Length = 286
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagactc 30
|||| ||||||||||||||||||||||
Sbjct: 252 tccagcctgggcgacagagtaagactc 278
>RF00017;Metazoa_SRP;ABGA01335758.1/2336-2617 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 ttccatcctgggcgacagagtaagactctgtctc 36
||||| ||||||||||||||| ||| ||||||||
Sbjct: 247 ttccagcctgggcgacagagtgagattctgtctc 280
>RF00017;Metazoa_SRP;ABGA01097901.1/4116-4414 9601:Pongo abelii
(Sumatran orangutan)
Length = 299
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tccatcctgggcgacagagtaagact 29
|||| |||||||||||||||||||||
Sbjct: 246 tccagcctgggcgacagagtaagact 271
>RF00017;Metazoa_SRP;AACZ02117017.1/1641-1361 9598:Pan troglodytes
(chimpanzee)
Length = 281
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cattccatcctgggcgacagagtaagactc 30
||||||| |||||||||||||| |||||||
Sbjct: 246 cattccagcctgggcgacagagcaagactc 275
