miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
          (cape rock hyrax)
          Length = 69

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 24 aatctagtggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgctt 83
          ||||||||||||||| |||||||||||||||||| |||  | |||||||||||| |||||
Sbjct: 1  aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59

                    
Query: 84 ctgctacatt 93
          ||||||||||
Sbjct: 60 ctgctacatt 69




>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
          (American pika)
          Length = 70

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                      
Query: 24 aatctagtggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgctt 83
          ||||||||||||||||||| ||||| ||| |||| ||||   |||||||||||| |||||
Sbjct: 1  aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60

                    
Query: 84 ctgctacatt 93
          ||||||||||
Sbjct: 61 ctgctacatt 70




>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
          norvegicus (Norway rat)
          Length = 69

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 24 aatctagtggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgctt 83
          ||||||||||||||| ||||||||||||| |||| | |   ||||||||| |||||||||
Sbjct: 1  aatctagtggaaacacttctgcacaaactcgatt-ttgatgccagtgtgcagaaatgctt 59

                    
Query: 84 ctgctacatt 93
          ||||||||||
Sbjct: 60 ctgctacatt 69




>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
          Length = 70

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                      
Query: 31 tggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgcttctgctac 90
          |||||||||||||||||||||| |||| |||  |||| |||||  |||||||| ||||||
Sbjct: 8  tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67

             
Query: 91 att 93
          |||
Sbjct: 68 att 70




>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
          Length = 70

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                      
Query: 24 aatctagtggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgctt 83
          |||||||||||| || ||||||||||||| || |   |  | ||||||||||||||||||
Sbjct: 1  aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60

                    
Query: 84 ctgctacatt 93
          ||||||||||
Sbjct: 61 ctgctacatt 70




>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
          (tammar wallaby)
          Length = 70

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 24 aatctagtggaaacatttctgcacaaactagat 56
          ||||||||||||||||||||||||| |||||||
Sbjct: 1  aatctagtggaaacatttctgcacagactagat 33




>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
          cat)
          Length = 71

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 34 aaacatttctgcacaaactagattctgggcaccagtgtgc 73
          |||||||||||||||||||||||| |||  ||||||||||
Sbjct: 11 aaacatttctgcacaaactagattatggataccagtgtgc 50




>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 70

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 25 atctagtggaaacatttctgcacaaactaga 55
          ||||||||||||||| |||||||||||||||
Sbjct: 2  atctagtggaaacatctctgcacaaactaga 32




>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
          (ghost shark)
          Length = 68

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 54/62 (87%), Gaps = 2/62 (3%)
 Strand = Plus / Plus

                                                                      
Query: 32 ggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgcttctgctaca 91
          |||| |||||||||||||||| | | ||||  | ||||||||||||||||||||| ||||
Sbjct: 9  ggaatcatttctgcacaaactcggtactgg--aacagtgtgcggaaatgcttctggtaca 66

            
Query: 92 tt 93
          ||
Sbjct: 67 tt 68




>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
          (horse)
          Length = 70

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                
Query: 40 ttctgcacaaactagattctgggcaccagtgtgcggaaatgcttctgctacatt 93
          ||||||||||||| || | |||  | |||||||| |||||||||||||||||||
Sbjct: 17 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 70




>RF00693;mir-147;AAWR02026698.1/2322-2389 9796:Equus caballus
          (horse)
          Length = 68

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 25 atctagtggaaacatttctgcacaa 49
          |||||||||||||||||||||||||
Sbjct: 2  atctagtggaaacatttctgcacaa 26




>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
          (bottlenosed dolphin)
          Length = 69

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                               
Query: 37 catttctgcacaaactagattctgggcaccagtgtgcggaaatgcttctgcta 89
          |||||||||| | || ||||| |||  ||||||||| ||||||||||||||||
Sbjct: 13 catttctgcatagacaagattatggaaaccagtgtgtggaaatgcttctgcta 65




>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
          (rhesus monkey)
          Length = 72

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 65 ccagtgtgcggaaatgcttctgctacatt 93
          |||||||| ||||||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgctacatt 72




>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 70

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 57 tctgggcaccagtgtgcggaaatgcttctgcta 89
          ||||| ||||||||||||||| |||||||||||
Sbjct: 34 tctggacaccagtgtgcggaagtgcttctgcta 66




>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
          (tammar wallaby)
          Length = 70

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                      
Query: 30 gtggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgcttctgcta 89
          ||||||||||||||||||| |||| | |   |  |||||||||| ||| |||||||||||
Sbjct: 7  gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66

              
Query: 90 catt 93
          ||||
Sbjct: 67 catt 70




>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
          (domestic cat)
          Length = 69

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 64 accagtgtgcggaaatgcttctgctaca 91
          ||||||||| ||||||||||||||||||
Sbjct: 40 accagtgtgtggaaatgcttctgctaca 67




>RF00693;mir-147;CABD01100245.1/5309-5241 9595:Gorilla gorilla
          gorilla (Western lowland gorilla)
          Length = 69

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 26 tctagtggaaacatttctgcacaa 49
          ||||||||||||||||||||||||
Sbjct: 3  tctagtggaaacatttctgcacaa 26




>RF00693;mir-147;ABRN01368247.1/244-313 9739:Tursiops truncatus
          (bottlenosed dolphin)
          Length = 70

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 31 tggaaacatttctgcacaaactagatt 57
          |||||||||||||||||||| ||||||
Sbjct: 8  tggaaacatttctgcacaaagtagatt 34




>RF00693;mir-147;AAEX02028076.1/21466-21402 9615:Canis lupus
          familiaris (dog)
          Length = 65

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 tggaaacatttctgcacaaacta 53
          |||||||||||||||||||||||
Sbjct: 8  tggaaacatttctgcacaaacta 30




>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
          Length = 73

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 66 cagtgtgcggaaatgcttctgct 88
          |||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68




>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
          (Japanese medaka)
          Length = 73

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 66 cagtgtgcggaaatgcttctgct 88
          |||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68




>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 70

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 64 accagtgtgcggaaatgcttctgctacatt 93
          |||||||||| ||| |||||||||||||||
Sbjct: 41 accagtgtgcagaagtgcttctgctacatt 70




>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
          (large flying fox)
          Length = 70

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 67 agtgtgcggaaatgcttctgctacat 92
          |||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69




>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
          (bottlenosed dolphin)
          Length = 78

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 64 accagtgtgcggaaatgcttctgctacatt 93
          ||||||||| ||||||||||||| ||||||
Sbjct: 49 accagtgtgtggaaatgcttctgttacatt 78




>RF00693;mir-147;AANG01591628.1/889-825 9685:Felis catus (domestic
          cat)
          Length = 65

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 32 ggaaacatttctgcacaaacta 53
          ||||||||||||||||||||||
Sbjct: 9  ggaaacatttctgcacaaacta 30




>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 70

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                      
Query: 24 aatctagtggaaacatttctgcacaaactagattctgggcaccagtgtgcggaaatgctt 83
          ||||||| | ||| |||||||||||||| ||| | |||  || | |||| ||||||||||
Sbjct: 1  aatctagggaaaagatttctgcacaaaccagactttggaaactaatgtgtggaaatgctt 60

                    
Query: 84 ctgctacatt 93
          ||||| ||||
Sbjct: 61 ctgctgcatt 70